miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5534 3' -51 NC_001806.1 + 99713 0.66 0.995036
Target:  5'- gGGGAGGAccguAGGGGgcgCUGUGuggUggGGGg -3'
miRNA:   3'- -CCCUCUU----UCCCCa--GACGUug-GuuUCC- -5'
5534 3' -51 NC_001806.1 + 84069 0.66 0.993331
Target:  5'- uGGGAGuc-GGGGccccagCUGCGcgcuGCCGcgGAGGc -3'
miRNA:   3'- -CCCUCuuuCCCCa-----GACGU----UGGU--UUCC- -5'
5534 3' -51 NC_001806.1 + 5230 0.66 0.994234
Target:  5'- uGGGGGGAGGGGG-Cga-GACCcacGGa -3'
miRNA:   3'- -CCCUCUUUCCCCaGacgUUGGuuuCC- -5'
5534 3' -51 NC_001806.1 + 34750 0.66 0.993331
Target:  5'- aGGGGAucaAAGGGGg--GCAaaGCCGgcGGg -3'
miRNA:   3'- cCCUCU---UUCCCCagaCGU--UGGUuuCC- -5'
5534 3' -51 NC_001806.1 + 25131 0.66 0.992319
Target:  5'- aGGGGcGGGAGGGGgcgaGgGGCgGGAGGg -3'
miRNA:   3'- -CCCU-CUUUCCCCaga-CgUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 20625 0.66 0.994234
Target:  5'- cGGGGccGGGGGUU--CGACCAAcGGg -3'
miRNA:   3'- cCCUCuuUCCCCAGacGUUGGUUuCC- -5'
5534 3' -51 NC_001806.1 + 109537 0.66 0.995036
Target:  5'- cGGGAGccGGGGGaggUGCGccuggGCCAGGGc -3'
miRNA:   3'- -CCCUCuuUCCCCag-ACGU-----UGGUUUCc -5'
5534 3' -51 NC_001806.1 + 113394 0.66 0.994234
Target:  5'- cGGGAcgcccGGGGcCUGgAGCUggGGGu -3'
miRNA:   3'- -CCCUcuuu-CCCCaGACgUUGGuuUCC- -5'
5534 3' -51 NC_001806.1 + 30636 0.66 0.995036
Target:  5'- aGGGccGGGGGGG-C-GCGGCCAGGGu -3'
miRNA:   3'- -CCCucUUUCCCCaGaCGUUGGUUUCc -5'
5534 3' -51 NC_001806.1 + 140444 0.66 0.992319
Target:  5'- uGGGGGggGGGcGGUUacuCGGCCcccGAGGc -3'
miRNA:   3'- -CCCUCuuUCC-CCAGac-GUUGGu--UUCC- -5'
5534 3' -51 NC_001806.1 + 72646 0.67 0.983441
Target:  5'- cGGGGGAcGGccGGUCcgucgGCAaaACCAGAGGc -3'
miRNA:   3'- -CCCUCUuUCc-CCAGa----CGU--UGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 144036 0.67 0.989929
Target:  5'- gGGGuGuuGGGGGaggCgaggaaCAACCGAGGGg -3'
miRNA:   3'- -CCCuCuuUCCCCa--Gac----GUUGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 11794 0.67 0.989526
Target:  5'- aGGGAGcggggaugguggucGAGGGGGUggaggugGUggUCGAGGGg -3'
miRNA:   3'- -CCCUC--------------UUUCCCCAga-----CGuuGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 14222 0.67 0.98868
Target:  5'- gGGGGGggGGGGGgaaauuauacgacaaCUGgGuCCAuguAGGg -3'
miRNA:   3'- -CCCUCuuUCCCCa--------------GACgUuGGUu--UCC- -5'
5534 3' -51 NC_001806.1 + 56687 0.67 0.988535
Target:  5'- gGGGGGAcGGGGGcCcgGgAACCccGGGu -3'
miRNA:   3'- -CCCUCUuUCCCCaGa-CgUUGGuuUCC- -5'
5534 3' -51 NC_001806.1 + 105687 0.67 0.983441
Target:  5'- cGGGuGAAGGcccaGGG-CUcGCAGCCAAcgucGGGg -3'
miRNA:   3'- -CCCuCUUUC----CCCaGA-CGUUGGUU----UCC- -5'
5534 3' -51 NC_001806.1 + 20729 0.67 0.985299
Target:  5'- gGGGGGcgGGGGGcCgGCGGCCu---- -3'
miRNA:   3'- -CCCUCuuUCCCCaGaCGUUGGuuucc -5'
5534 3' -51 NC_001806.1 + 83259 0.67 0.986994
Target:  5'- cGGGGGGgcgggcgacggAGGGGGUUcggGCgGGCgCGGAGGa -3'
miRNA:   3'- -CCCUCU-----------UUCCCCAGa--CG-UUG-GUUUCC- -5'
5534 3' -51 NC_001806.1 + 145546 0.67 0.986994
Target:  5'- -uGGGggGGGGGagUGCGGggGAGGGg -3'
miRNA:   3'- ccCUCuuUCCCCagACGUUggUUUCC- -5'
5534 3' -51 NC_001806.1 + 25579 0.67 0.986994
Target:  5'- gGGGAGGGcuGGGGccggggagggCUGgGGCCGggGAGGg -3'
miRNA:   3'- -CCCUCUUu-CCCCa---------GACgUUGGU--UUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.