Results 21 - 40 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5534 | 3' | -51 | NC_001806.1 | + | 24986 | 0.71 | 0.907529 |
Target: 5'- aGGGGGAc-GGGGUgCUGUAACgGGccGGGa -3' miRNA: 3'- -CCCUCUuuCCCCA-GACGUUGgUU--UCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 37793 | 0.72 | 0.88037 |
Target: 5'- cGGGGcgcGGGGGUCcGCGGgCGGGGGg -3' miRNA: 3'- cCCUCuu-UCCCCAGaCGUUgGUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 66545 | 0.74 | 0.778251 |
Target: 5'- aGGGGGAAGucGGGGUUucgguuUGgGGCCGGGGGc -3' miRNA: 3'- -CCCUCUUU--CCCCAG------ACgUUGGUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 59197 | 0.74 | 0.768625 |
Target: 5'- -cGAGGGuGGGGUUuugaugGCAGCCAGGGGa -3' miRNA: 3'- ccCUCUUuCCCCAGa-----CGUUGGUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 34788 | 0.74 | 0.768625 |
Target: 5'- gGGGGGggGGGGGgggGCGggaaACCAAguAGGc -3' miRNA: 3'- -CCCUCuuUCCCCagaCGU----UGGUU--UCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 18305 | 0.74 | 0.768625 |
Target: 5'- uGGGGAcauacaAGGGGGUCgggGCGACCGGAc- -3' miRNA: 3'- cCCUCU------UUCCCCAGa--CGUUGGUUUcc -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 10390 | 0.76 | 0.708521 |
Target: 5'- gGGGGGgcGGGGGgagGCGggaGCCGGGGGg -3' miRNA: 3'- -CCCUCuuUCCCCagaCGU---UGGUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 110723 | 0.76 | 0.687831 |
Target: 5'- cGGGGGGGAGGaGGgagaaCUGCcGCUGGAGGa -3' miRNA: 3'- -CCCUCUUUCC-CCa----GACGuUGGUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 31370 | 0.77 | 0.645941 |
Target: 5'- gGGGAGggGGGGGUCggGC-GCUggGuGGu -3' miRNA: 3'- -CCCUCuuUCCCCAGa-CGuUGGuuU-CC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 28741 | 0.79 | 0.541547 |
Target: 5'- cGGGAGAagagggaagaaGAGGGGUCgGgAuCCAAAGGa -3' miRNA: 3'- -CCCUCU-----------UUCCCCAGaCgUuGGUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 32200 | 0.74 | 0.778251 |
Target: 5'- cGGGGGAcguGGGGUUgGUGugCAAAGGc -3' miRNA: 3'- -CCCUCUuu-CCCCAGaCGUugGUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 149841 | 0.74 | 0.778251 |
Target: 5'- cGGGGcuccauGGGGGUCguaUGCGGCUGGAGGg -3' miRNA: 3'- cCCUCuu----UCCCCAG---ACGUUGGUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 26162 | 0.72 | 0.872985 |
Target: 5'- gGGGAGGAgcGGGGGgaggaGCGGCCAGAc- -3' miRNA: 3'- -CCCUCUU--UCCCCaga--CGUUGGUUUcc -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 9516 | 0.72 | 0.865372 |
Target: 5'- aGGGAGAGucGGGUCUcuccggggggGCcAGCCAcGGGa -3' miRNA: 3'- -CCCUCUUucCCCAGA----------CG-UUGGUuUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 17182 | 0.72 | 0.857536 |
Target: 5'- -cGGGAAGGcGGGUCUGUgGACCGuAGGg -3' miRNA: 3'- ccCUCUUUC-CCCAGACG-UUGGUuUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 75530 | 0.73 | 0.849485 |
Target: 5'- aGGGcAGGuucGGGGGcCUGUugcacGCCGAAGGg -3' miRNA: 3'- -CCC-UCUu--UCCCCaGACGu----UGGUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 2860 | 0.73 | 0.841225 |
Target: 5'- cGGGGAGGGGGG-CgcggGCGuccgaGCCGGGGGc -3' miRNA: 3'- cCCUCUUUCCCCaGa---CGU-----UGGUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 13142 | 0.73 | 0.832765 |
Target: 5'- gGGGAGAGgcaggcugacGGGGGgaugcGCAGCgGGAGGg -3' miRNA: 3'- -CCCUCUU----------UCCCCaga--CGUUGgUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 65291 | 0.73 | 0.815273 |
Target: 5'- gGGGAGGagGAGGGGg--GCccCCAAGGGc -3' miRNA: 3'- -CCCUCU--UUCCCCagaCGuuGGUUUCC- -5' |
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5534 | 3' | -51 | NC_001806.1 | + | 117068 | 0.74 | 0.787738 |
Target: 5'- gGGGGGguGGGGGUggGCAuCCAGGGa -3' miRNA: 3'- -CCCUCuuUCCCCAgaCGUuGGUUUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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