miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5534 3' -51 NC_001806.1 + 18305 0.74 0.768625
Target:  5'- uGGGGAcauacaAGGGGGUCgggGCGACCGGAc- -3'
miRNA:   3'- cCCUCU------UUCCCCAGa--CGUUGGUUUcc -5'
5534 3' -51 NC_001806.1 + 10390 0.76 0.708521
Target:  5'- gGGGGGgcGGGGGgagGCGggaGCCGGGGGg -3'
miRNA:   3'- -CCCUCuuUCCCCagaCGU---UGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 110723 0.76 0.687831
Target:  5'- cGGGGGGGAGGaGGgagaaCUGCcGCUGGAGGa -3'
miRNA:   3'- -CCCUCUUUCC-CCa----GACGuUGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 31370 0.77 0.645941
Target:  5'- gGGGAGggGGGGGUCggGC-GCUggGuGGu -3'
miRNA:   3'- -CCCUCuuUCCCCAGa-CGuUGGuuU-CC- -5'
5534 3' -51 NC_001806.1 + 28741 0.79 0.541547
Target:  5'- cGGGAGAagagggaagaaGAGGGGUCgGgAuCCAAAGGa -3'
miRNA:   3'- -CCCUCU-----------UUCCCCAGaCgUuGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 2860 0.73 0.841225
Target:  5'- cGGGGAGGGGGG-CgcggGCGuccgaGCCGGGGGc -3'
miRNA:   3'- cCCUCUUUCCCCaGa---CGU-----UGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 75530 0.73 0.849485
Target:  5'- aGGGcAGGuucGGGGGcCUGUugcacGCCGAAGGg -3'
miRNA:   3'- -CCC-UCUu--UCCCCaGACGu----UGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 147889 0.7 0.925301
Target:  5'- aGGGGGGc--GGGUCUGUugaCAAGGGg -3'
miRNA:   3'- -CCCUCUuucCCCAGACGuugGUUUCC- -5'
5534 3' -51 NC_001806.1 + 67705 0.7 0.925301
Target:  5'- aGGGGGggGGGGGUCgaaagGaCAcUCAcgcAAGGc -3'
miRNA:   3'- -CCCUCuuUCCCCAGa----C-GUuGGU---UUCC- -5'
5534 3' -51 NC_001806.1 + 34488 0.71 0.913705
Target:  5'- gGGGAGAcGGGGGgaaaGCAAggacacggcCCGGGGGg -3'
miRNA:   3'- -CCCUCUuUCCCCaga-CGUU---------GGUUUCC- -5'
5534 3' -51 NC_001806.1 + 35047 0.71 0.913705
Target:  5'- gGGGAGAGGGGGGgagaggGgAGCCAGu-- -3'
miRNA:   3'- -CCCUCUUUCCCCaga---CgUUGGUUucc -5'
5534 3' -51 NC_001806.1 + 6547 0.71 0.913705
Target:  5'- cGGAGGAGGGGGgacgCggggGCGGagGAGGGg -3'
miRNA:   3'- cCCUCUUUCCCCa---Ga---CGUUggUUUCC- -5'
5534 3' -51 NC_001806.1 + 6503 0.71 0.913705
Target:  5'- cGGAGGAGGGGGgacgCggggGCGGagGAGGGg -3'
miRNA:   3'- cCCUCUUUCCCCa---Ga---CGUUggUUUCC- -5'
5534 3' -51 NC_001806.1 + 6459 0.71 0.913705
Target:  5'- cGGAGGAGGGGGgacgCggggGCGGagGAGGGg -3'
miRNA:   3'- cCCUCUUUCCCCa---Ga---CGUUggUUUCC- -5'
5534 3' -51 NC_001806.1 + 143330 0.71 0.913705
Target:  5'- aGGGGGggGGGGGgcgCUGguUggUCAaaaAAGGg -3'
miRNA:   3'- -CCCUCuuUCCCCa--GAC--GuuGGU---UUCC- -5'
5534 3' -51 NC_001806.1 + 24986 0.71 0.907529
Target:  5'- aGGGGGAc-GGGGUgCUGUAACgGGccGGGa -3'
miRNA:   3'- -CCCUCUuuCCCCA-GACGUUGgUU--UCC- -5'
5534 3' -51 NC_001806.1 + 37793 0.72 0.88037
Target:  5'- cGGGGcgcGGGGGUCcGCGGgCGGGGGg -3'
miRNA:   3'- cCCUCuu-UCCCCAGaCGUUgGUUUCC- -5'
5534 3' -51 NC_001806.1 + 26162 0.72 0.872985
Target:  5'- gGGGAGGAgcGGGGGgaggaGCGGCCAGAc- -3'
miRNA:   3'- -CCCUCUU--UCCCCaga--CGUUGGUUUcc -5'
5534 3' -51 NC_001806.1 + 9516 0.72 0.865372
Target:  5'- aGGGAGAGucGGGUCUcuccggggggGCcAGCCAcGGGa -3'
miRNA:   3'- -CCCUCUUucCCCAGA----------CG-UUGGUuUCC- -5'
5534 3' -51 NC_001806.1 + 17182 0.72 0.857536
Target:  5'- -cGGGAAGGcGGGUCUGUgGACCGuAGGg -3'
miRNA:   3'- ccCUCUUUC-CCCAGACG-UUGGUuUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.