miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5534 3' -51 NC_001806.1 + 24986 0.71 0.907529
Target:  5'- aGGGGGAc-GGGGUgCUGUAACgGGccGGGa -3'
miRNA:   3'- -CCCUCUuuCCCCA-GACGUUGgUU--UCC- -5'
5534 3' -51 NC_001806.1 + 143330 0.71 0.913705
Target:  5'- aGGGGGggGGGGGgcgCUGguUggUCAaaaAAGGg -3'
miRNA:   3'- -CCCUCuuUCCCCa--GAC--GuuGGU---UUCC- -5'
5534 3' -51 NC_001806.1 + 34488 0.71 0.913705
Target:  5'- gGGGAGAcGGGGGgaaaGCAAggacacggcCCGGGGGg -3'
miRNA:   3'- -CCCUCUuUCCCCaga-CGUU---------GGUUUCC- -5'
5534 3' -51 NC_001806.1 + 35047 0.71 0.913705
Target:  5'- gGGGAGAGGGGGGgagaggGgAGCCAGu-- -3'
miRNA:   3'- -CCCUCUUUCCCCaga---CgUUGGUUucc -5'
5534 3' -51 NC_001806.1 + 6547 0.71 0.913705
Target:  5'- cGGAGGAGGGGGgacgCggggGCGGagGAGGGg -3'
miRNA:   3'- cCCUCUUUCCCCa---Ga---CGUUggUUUCC- -5'
5534 3' -51 NC_001806.1 + 6503 0.71 0.913705
Target:  5'- cGGAGGAGGGGGgacgCggggGCGGagGAGGGg -3'
miRNA:   3'- cCCUCUUUCCCCa---Ga---CGUUggUUUCC- -5'
5534 3' -51 NC_001806.1 + 6459 0.71 0.913705
Target:  5'- cGGAGGAGGGGGgacgCggggGCGGagGAGGGg -3'
miRNA:   3'- cCCUCUUUCCCCa---Ga---CGUUggUUUCC- -5'
5534 3' -51 NC_001806.1 + 67705 0.7 0.925301
Target:  5'- aGGGGGggGGGGGUCgaaagGaCAcUCAcgcAAGGc -3'
miRNA:   3'- -CCCUCuuUCCCCAGa----C-GUuGGU---UUCC- -5'
5534 3' -51 NC_001806.1 + 147889 0.7 0.925301
Target:  5'- aGGGGGGc--GGGUCUGUugaCAAGGGg -3'
miRNA:   3'- -CCCUCUuucCCCAGACGuugGUUUCC- -5'
5534 3' -51 NC_001806.1 + 34290 0.7 0.93072
Target:  5'- gGGGcGGGAuGGGGUUUaGCGGCgGGGGGc -3'
miRNA:   3'- -CCC-UCUUuCCCCAGA-CGUUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 147486 0.7 0.93072
Target:  5'- aGGGGAgcGGGG-CgGCG-CCGGAGGg -3'
miRNA:   3'- cCCUCUuuCCCCaGaCGUuGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 59053 0.7 0.935887
Target:  5'- gGGGAGgcGGGGGcCa-CAccGCCAGGGGa -3'
miRNA:   3'- -CCCUCuuUCCCCaGacGU--UGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 36709 0.7 0.940801
Target:  5'- uGGuGAGGGGGGUCgcugucauagUGCAAaaGGGGGg -3'
miRNA:   3'- cCCuCUUUCCCCAG----------ACGUUggUUUCC- -5'
5534 3' -51 NC_001806.1 + 135110 0.7 0.945465
Target:  5'- aGGGGGgcGGGGGcagcgCUGCGugCu--GGa -3'
miRNA:   3'- -CCCUCuuUCCCCa----GACGUugGuuuCC- -5'
5534 3' -51 NC_001806.1 + 134240 0.7 0.945465
Target:  5'- cGGAGcgGGGGGgcggCcccgGCAGCCGgaauGAGGa -3'
miRNA:   3'- cCCUCuuUCCCCa---Ga---CGUUGGU----UUCC- -5'
5534 3' -51 NC_001806.1 + 44744 0.7 0.949881
Target:  5'- uGGAGggGGGGGcgccagUUGCGggaacuGCCGcAGGg -3'
miRNA:   3'- cCCUCuuUCCCCa-----GACGU------UGGUuUCC- -5'
5534 3' -51 NC_001806.1 + 29995 0.7 0.951158
Target:  5'- gGGGGGGuuGGGGUUgggguugggguugUugaagcggaggcgggGCGGCCGAGGGg -3'
miRNA:   3'- -CCCUCUuuCCCCAG-------------A---------------CGUUGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 65635 0.69 0.954053
Target:  5'- uGGGcGAGAGGGGcCccgGCGGCCucccccuGGGu -3'
miRNA:   3'- -CCCuCUUUCCCCaGa--CGUUGGuu-----UCC- -5'
5534 3' -51 NC_001806.1 + 151236 0.69 0.957983
Target:  5'- gGGGuGGGAGGGGUCaGCcccGCCccccGGGc -3'
miRNA:   3'- -CCCuCUUUCCCCAGaCGu--UGGuu--UCC- -5'
5534 3' -51 NC_001806.1 + 62244 0.69 0.961677
Target:  5'- cGGGGGAGAGGG--CUGgGGCCGcGGa -3'
miRNA:   3'- -CCCUCUUUCCCcaGACgUUGGUuUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.