miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5534 3' -51 NC_001806.1 + 113394 0.66 0.994234
Target:  5'- cGGGAcgcccGGGGcCUGgAGCUggGGGu -3'
miRNA:   3'- -CCCUcuuu-CCCCaGACgUUGGuuUCC- -5'
5534 3' -51 NC_001806.1 + 111343 0.66 0.994234
Target:  5'- cGGGGggGGGGGUauauaaGGCCu-GGGa -3'
miRNA:   3'- cCCUCuuUCCCCAgacg--UUGGuuUCC- -5'
5534 3' -51 NC_001806.1 + 110723 0.76 0.687831
Target:  5'- cGGGGGGGAGGaGGgagaaCUGCcGCUGGAGGa -3'
miRNA:   3'- -CCCUCUUUCC-CCa----GACGuUGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 109537 0.66 0.995036
Target:  5'- cGGGAGccGGGGGaggUGCGccuggGCCAGGGc -3'
miRNA:   3'- -CCCUCuuUCCCCag-ACGU-----UGGUUUCc -5'
5534 3' -51 NC_001806.1 + 105687 0.67 0.983441
Target:  5'- cGGGuGAAGGcccaGGG-CUcGCAGCCAAcgucGGGg -3'
miRNA:   3'- -CCCuCUUUC----CCCaGA-CGUUGGUU----UCC- -5'
5534 3' -51 NC_001806.1 + 105462 0.66 0.992319
Target:  5'- cGGGAGAuGGGGGag-GCuAACUgaaacacgGAAGGa -3'
miRNA:   3'- -CCCUCUuUCCCCagaCG-UUGG--------UUUCC- -5'
5534 3' -51 NC_001806.1 + 105120 0.66 0.991188
Target:  5'- cGGGAGGAuuGGGGaCaGCuuUCGGGGGc -3'
miRNA:   3'- -CCCUCUUu-CCCCaGaCGuuGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 103584 0.69 0.967428
Target:  5'- cGGGGGGAGGGGGaaggaacgaaacacUCUcauucggagGCGGCUcgGGGu -3'
miRNA:   3'- -CCCUCUUUCCCC--------------AGA---------CGUUGGuuUCC- -5'
5534 3' -51 NC_001806.1 + 99713 0.66 0.995036
Target:  5'- gGGGAGGAccguAGGGGgcgCUGUGuggUggGGGg -3'
miRNA:   3'- -CCCUCUU----UCCCCa--GACGUug-GuuUCC- -5'
5534 3' -51 NC_001806.1 + 95296 0.68 0.979198
Target:  5'- uGGGGGcgGGGGGcgCgGCGGacgcgcCCAAGGGc -3'
miRNA:   3'- -CCCUCuuUCCCCa-GaCGUU------GGUUUCC- -5'
5534 3' -51 NC_001806.1 + 85177 0.69 0.965139
Target:  5'- cGGGAGAcGGGcGGUUcGCcGCCAccagccgcGAGGc -3'
miRNA:   3'- -CCCUCUuUCC-CCAGaCGuUGGU--------UUCC- -5'
5534 3' -51 NC_001806.1 + 84069 0.66 0.993331
Target:  5'- uGGGAGuc-GGGGccccagCUGCGcgcuGCCGcgGAGGc -3'
miRNA:   3'- -CCCUCuuuCCCCa-----GACGU----UGGU--UUCC- -5'
5534 3' -51 NC_001806.1 + 83259 0.67 0.986994
Target:  5'- cGGGGGGgcgggcgacggAGGGGGUUcggGCgGGCgCGGAGGa -3'
miRNA:   3'- -CCCUCU-----------UUCCCCAGa--CG-UUG-GUUUCC- -5'
5534 3' -51 NC_001806.1 + 75530 0.73 0.849485
Target:  5'- aGGGcAGGuucGGGGGcCUGUugcacGCCGAAGGg -3'
miRNA:   3'- -CCC-UCUu--UCCCCaGACGu----UGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 72646 0.67 0.983441
Target:  5'- cGGGGGAcGGccGGUCcgucgGCAaaACCAGAGGc -3'
miRNA:   3'- -CCCUCUuUCc-CCAGa----CGU--UGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 71540 0.66 0.992319
Target:  5'- cGGGGggGGGGGUggaaGACCAAGa- -3'
miRNA:   3'- cCCUCuuUCCCCAgacgUUGGUUUcc -5'
5534 3' -51 NC_001806.1 + 67705 0.7 0.925301
Target:  5'- aGGGGGggGGGGGUCgaaagGaCAcUCAcgcAAGGc -3'
miRNA:   3'- -CCCUCuuUCCCCAGa----C-GUuGGU---UUCC- -5'
5534 3' -51 NC_001806.1 + 66545 0.74 0.778251
Target:  5'- aGGGGGAAGucGGGGUUucgguuUGgGGCCGGGGGc -3'
miRNA:   3'- -CCCUCUUU--CCCCAG------ACgUUGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 65635 0.69 0.954053
Target:  5'- uGGGcGAGAGGGGcCccgGCGGCCucccccuGGGu -3'
miRNA:   3'- -CCCuCUUUCCCCaGa--CGUUGGuu-----UCC- -5'
5534 3' -51 NC_001806.1 + 65291 0.73 0.815273
Target:  5'- gGGGAGGagGAGGGGg--GCccCCAAGGGc -3'
miRNA:   3'- -CCCUCU--UUCCCCagaCGuuGGUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.