miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5534 3' -51 NC_001806.1 + 151274 0.66 0.991188
Target:  5'- cGGGcGguGGGGG-CcGgGGCCGGGGGg -3'
miRNA:   3'- -CCCuCuuUCCCCaGaCgUUGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 151236 0.69 0.957983
Target:  5'- gGGGuGGGAGGGGUCaGCcccGCCccccGGGc -3'
miRNA:   3'- -CCCuCUUUCCCCAGaCGu--UGGuu--UCC- -5'
5534 3' -51 NC_001806.1 + 151091 0.66 0.991188
Target:  5'- cGGGGGucgcGGGGGUCgcggggGUcGCgGGGGGc -3'
miRNA:   3'- -CCCUCuu--UCCCCAGa-----CGuUGgUUUCC- -5'
5534 3' -51 NC_001806.1 + 149882 0.68 0.979198
Target:  5'- cGGAGGGucccuGGGGGUC-GCAACguAGGcGg -3'
miRNA:   3'- cCCUCUU-----UCCCCAGaCGUUGguUUC-C- -5'
5534 3' -51 NC_001806.1 + 149841 0.74 0.778251
Target:  5'- cGGGGcuccauGGGGGUCguaUGCGGCUGGAGGg -3'
miRNA:   3'- cCCUCuu----UCCCCAG---ACGUUGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 149417 0.66 0.993331
Target:  5'- -uGAGucAGGGGGUCccacgGCGACCccGGGc -3'
miRNA:   3'- ccCUCu-UUCCCCAGa----CGUUGGuuUCC- -5'
5534 3' -51 NC_001806.1 + 149157 1.13 0.0052
Target:  5'- gGGGAGAAAGGGGUCUGCAACCAAAGGu -3'
miRNA:   3'- -CCCUCUUUCCCCAGACGUUGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 147889 0.7 0.925301
Target:  5'- aGGGGGGc--GGGUCUGUugaCAAGGGg -3'
miRNA:   3'- -CCCUCUuucCCCAGACGuugGUUUCC- -5'
5534 3' -51 NC_001806.1 + 147836 0.66 0.994234
Target:  5'- gGGGAGAGgccGGGGGggagucgCUGaucACUAuGGGg -3'
miRNA:   3'- -CCCUCUU---UCCCCa------GACgu-UGGUuUCC- -5'
5534 3' -51 NC_001806.1 + 147486 0.7 0.93072
Target:  5'- aGGGGAgcGGGG-CgGCG-CCGGAGGg -3'
miRNA:   3'- cCCUCUuuCCCCaGaCGUuGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 146173 0.69 0.968376
Target:  5'- cGGGGAucGGuGGUCagGCAGCCc-GGGc -3'
miRNA:   3'- cCCUCUuuCC-CCAGa-CGUUGGuuUCC- -5'
5534 3' -51 NC_001806.1 + 145546 0.67 0.986994
Target:  5'- -uGGGggGGGGGagUGCGGggGAGGGg -3'
miRNA:   3'- ccCUCuuUCCCCagACGUUggUUUCC- -5'
5534 3' -51 NC_001806.1 + 144036 0.67 0.989929
Target:  5'- gGGGuGuuGGGGGaggCgaggaaCAACCGAGGGg -3'
miRNA:   3'- -CCCuCuuUCCCCa--Gac----GUUGGUUUCC- -5'
5534 3' -51 NC_001806.1 + 143362 0.66 0.995036
Target:  5'- nGGAGGGacGGGGGcCgGCAgACCGAcGGc -3'
miRNA:   3'- cCCUCUU--UCCCCaGaCGU-UGGUUuCC- -5'
5534 3' -51 NC_001806.1 + 143330 0.71 0.913705
Target:  5'- aGGGGGggGGGGGgcgCUGguUggUCAaaaAAGGg -3'
miRNA:   3'- -CCCUCuuUCCCCa--GAC--GuuGGU---UUCC- -5'
5534 3' -51 NC_001806.1 + 140444 0.66 0.992319
Target:  5'- uGGGGGggGGGcGGUUacuCGGCCcccGAGGc -3'
miRNA:   3'- -CCCUCuuUCC-CCAGac-GUUGGu--UUCC- -5'
5534 3' -51 NC_001806.1 + 135110 0.7 0.945465
Target:  5'- aGGGGGgcGGGGGcagcgCUGCGugCu--GGa -3'
miRNA:   3'- -CCCUCuuUCCCCa----GACGUugGuuuCC- -5'
5534 3' -51 NC_001806.1 + 134240 0.7 0.945465
Target:  5'- cGGAGcgGGGGGgcggCcccgGCAGCCGgaauGAGGa -3'
miRNA:   3'- cCCUCuuUCCCCa---Ga---CGUUGGU----UUCC- -5'
5534 3' -51 NC_001806.1 + 128899 0.68 0.979198
Target:  5'- cGGGAGAuccucuGGGGGcCggGCGucCCAuuGGg -3'
miRNA:   3'- -CCCUCUu-----UCCCCaGa-CGUu-GGUuuCC- -5'
5534 3' -51 NC_001806.1 + 117068 0.74 0.787738
Target:  5'- gGGGGGguGGGGGUggGCAuCCAGGGa -3'
miRNA:   3'- -CCCUCuuUCCCCAgaCGUuGGUUUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.