miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 5' -66 NC_001806.1 + 27090 0.66 0.524249
Target:  5'- -gGCCCGCGGaGcCGGCCCgGcGAAc- -3'
miRNA:   3'- ggCGGGCGCCcCuGCCGGGgC-CUUca -5'
5537 5' -66 NC_001806.1 + 73931 0.66 0.524249
Target:  5'- cUCGCUCGCGGGGucgacGCGGUCucacagcacgCCGGGc-- -3'
miRNA:   3'- -GGCGGGCGCCCC-----UGCCGG----------GGCCUuca -5'
5537 5' -66 NC_001806.1 + 2717 0.66 0.524249
Target:  5'- gCCGCCCa-GGGGGucggGGCCCuCGGcGGg -3'
miRNA:   3'- -GGCGGGcgCCCCUg---CCGGG-GCCuUCa -5'
5537 5' -66 NC_001806.1 + 2425 0.66 0.524249
Target:  5'- -gGCCCGaggcgcgcaGGGGgccaaagagGCGGCCCCcggcggccccguGGggGUg -3'
miRNA:   3'- ggCGGGCg--------CCCC---------UGCCGGGG------------CCuuCA- -5'
5537 5' -66 NC_001806.1 + 48294 0.66 0.524249
Target:  5'- aCGCCCccgaagagGCGGGGcugGCGGCUCCGc---- -3'
miRNA:   3'- gGCGGG--------CGCCCC---UGCCGGGGCcuuca -5'
5537 5' -66 NC_001806.1 + 33133 0.66 0.524249
Target:  5'- aCCGCCgCGguCGGGGGCcccucGUCCCGGGc-- -3'
miRNA:   3'- -GGCGG-GC--GCCCCUGc----CGGGGCCUuca -5'
5537 5' -66 NC_001806.1 + 37949 0.66 0.524249
Target:  5'- cCCGCCC-CGGGG-CGGggucCCCCaGGGu-- -3'
miRNA:   3'- -GGCGGGcGCCCCuGCC----GGGG-CCUuca -5'
5537 5' -66 NC_001806.1 + 11682 0.66 0.521526
Target:  5'- gUCGCUCGCGuGGcauuaGAUGGggguucgugguugaCCCCGGGAGg -3'
miRNA:   3'- -GGCGGGCGC-CC-----CUGCC--------------GGGGCCUUCa -5'
5537 5' -66 NC_001806.1 + 135242 0.66 0.515193
Target:  5'- -aGCCCGUGauGGGCGcGCcuaCCCGGggGg -3'
miRNA:   3'- ggCGGGCGCc-CCUGC-CG---GGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 5098 0.66 0.515193
Target:  5'- gCgGCCCGuCGGuGG--GGCCCgGGGAGc -3'
miRNA:   3'- -GgCGGGC-GCC-CCugCCGGGgCCUUCa -5'
5537 5' -66 NC_001806.1 + 34513 0.66 0.515193
Target:  5'- aCgGCCCGgGGGGugGGagCgCGGGccGGg -3'
miRNA:   3'- -GgCGGGCgCCCCugCCg-GgGCCU--UCa -5'
5537 5' -66 NC_001806.1 + 89435 0.66 0.515193
Target:  5'- gCCGCuuGgGuGGGAUGGCaaaauuaCCGGAc-- -3'
miRNA:   3'- -GGCGggCgC-CCCUGCCGg------GGCCUuca -5'
5537 5' -66 NC_001806.1 + 65434 0.66 0.515193
Target:  5'- aCCGCaacgaagggaGCGGGGgaugccGCGGcCCCCGGGu-- -3'
miRNA:   3'- -GGCGgg--------CGCCCC------UGCC-GGGGCCUuca -5'
5537 5' -66 NC_001806.1 + 30255 0.66 0.506202
Target:  5'- gCCGCCUcCGGGGccCGGCCCCc----- -3'
miRNA:   3'- -GGCGGGcGCCCCu-GCCGGGGccuuca -5'
5537 5' -66 NC_001806.1 + 119546 0.66 0.506202
Target:  5'- gCCGUCaGCGGGGGCG-CCauGGggGc -3'
miRNA:   3'- -GGCGGgCGCCCCUGCcGGggCCuuCa -5'
5537 5' -66 NC_001806.1 + 54714 0.66 0.506202
Target:  5'- aCGCCCuCGGGGACG-CagCCGGccGUg -3'
miRNA:   3'- gGCGGGcGCCCCUGCcGg-GGCCuuCA- -5'
5537 5' -66 NC_001806.1 + 99730 0.66 0.506202
Target:  5'- gCGCUgugugGUGGGGggcgauacACGGCCuCCGGggGa -3'
miRNA:   3'- gGCGGg----CGCCCC--------UGCCGG-GGCCuuCa -5'
5537 5' -66 NC_001806.1 + 11358 0.66 0.500839
Target:  5'- gCCGCCCcaGCGGGcuccgacucuucggcGAUGGCCgucaGGGAGg -3'
miRNA:   3'- -GGCGGG--CGCCC---------------CUGCCGGgg--CCUUCa -5'
5537 5' -66 NC_001806.1 + 35122 0.66 0.497278
Target:  5'- gCGuCCCGUGGacGCGGCCCuCGGuuGg -3'
miRNA:   3'- gGC-GGGCGCCccUGCCGGG-GCCuuCa -5'
5537 5' -66 NC_001806.1 + 132503 0.66 0.497278
Target:  5'- gCCGCCCcCGGGGcccUGGCCCCc----- -3'
miRNA:   3'- -GGCGGGcGCCCCu--GCCGGGGccuuca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.