Results 21 - 40 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5537 | 5' | -66 | NC_001806.1 | + | 132503 | 0.66 | 0.497278 |
Target: 5'- gCCGCCCcCGGGGcccUGGCCCCc----- -3' miRNA: 3'- -GGCGGGcGCCCCu--GCCGGGGccuuca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 35122 | 0.66 | 0.497278 |
Target: 5'- gCGuCCCGUGGacGCGGCCCuCGGuuGg -3' miRNA: 3'- gGC-GGGCGCCccUGCCGGG-GCCuuCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 38802 | 0.66 | 0.497278 |
Target: 5'- uCCGCuuCCGCGGGGAccCGGg--CGGggGUg -3' miRNA: 3'- -GGCG--GGCGCCCCU--GCCgggGCCuuCA- -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 22571 | 0.66 | 0.497278 |
Target: 5'- -gGgCCGCGGGGA--GCCCCGGc--- -3' miRNA: 3'- ggCgGGCGCCCCUgcCGGGGCCuuca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 93580 | 0.66 | 0.488425 |
Target: 5'- gCCGUUCgGCGGcccGGgGGCCCCGGGAc- -3' miRNA: 3'- -GGCGGG-CGCCc--CUgCCGGGGCCUUca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 46189 | 0.66 | 0.483149 |
Target: 5'- cCCGaaCCCaGCGGGuGgcgacuaaggcccccGCGGCCCCGGcGGc -3' miRNA: 3'- -GGC--GGG-CGCCC-C---------------UGCCGGGGCCuUCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 93460 | 0.66 | 0.479647 |
Target: 5'- gUGgUCGaCGGacGCGGCCCUGGAGGUg -3' miRNA: 3'- gGCgGGC-GCCccUGCCGGGGCCUUCA- -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 27315 | 0.66 | 0.479647 |
Target: 5'- gCGUCCGCcgagucuucGGGGccCGGCCCauugggCGGGAGUu -3' miRNA: 3'- gGCGGGCG---------CCCCu-GCCGGG------GCCUUCA- -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 115652 | 0.66 | 0.479647 |
Target: 5'- gUGCCCGCaacGGGGAa-GCCCacgcgCGGGAGa -3' miRNA: 3'- gGCGGGCG---CCCCUgcCGGG-----GCCUUCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 77937 | 0.66 | 0.479647 |
Target: 5'- -gGCCCaGCuggaauGGGGgggugacgcgGCGGCCCCGGGGc- -3' miRNA: 3'- ggCGGG-CG------CCCC----------UGCCGGGGCCUUca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 68572 | 0.66 | 0.479647 |
Target: 5'- gCCgGCCUGCGcaccGcGGCGGCCCUGGGgccGGUc -3' miRNA: 3'- -GG-CGGGCGCc---C-CUGCCGGGGCCU---UCA- -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 23937 | 0.66 | 0.479647 |
Target: 5'- gCCGgCgGCGGGGccugggGgGGCCgCCGGAguGGUc -3' miRNA: 3'- -GGCgGgCGCCCC------UgCCGG-GGCCU--UCA- -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 86380 | 0.66 | 0.474418 |
Target: 5'- uCC-UCCGCGGGGcgcucggcuaacgcgGCGGCCgcuCCGGAgacGGUa -3' miRNA: 3'- -GGcGGGCGCCCC---------------UGCCGG---GGCCU---UCA- -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 83952 | 0.66 | 0.470948 |
Target: 5'- gCCGCUCGCaacGGGGAauucgagaCGGUCgCCGGGGa- -3' miRNA: 3'- -GGCGGGCG---CCCCU--------GCCGG-GGCCUUca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 3535 | 0.66 | 0.470948 |
Target: 5'- gCCcCCCGCGGGGgagGCGGgCgCGGcGGa -3' miRNA: 3'- -GGcGGGCGCCCC---UGCCgGgGCCuUCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 27230 | 0.66 | 0.470948 |
Target: 5'- gCCaGCCCGCccucacagGGcGGGCcGCCUCGGggGc -3' miRNA: 3'- -GG-CGGGCG--------CC-CCUGcCGGGGCCuuCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 147739 | 0.66 | 0.470948 |
Target: 5'- aCgGCCgCGCGGGGGCgcgcgGGUCCCGa---- -3' miRNA: 3'- -GgCGG-GCGCCCCUG-----CCGGGGCcuuca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 95434 | 0.66 | 0.470948 |
Target: 5'- -gGCCCGgGGGGcaGgGGCCCgagacgUGGggGg -3' miRNA: 3'- ggCGGGCgCCCC--UgCCGGG------GCCuuCa -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 20178 | 0.66 | 0.470948 |
Target: 5'- cCCGCCCcCGGGGcCGGCg-CGGAGu- -3' miRNA: 3'- -GGCGGGcGCCCCuGCCGggGCCUUca -5' |
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5537 | 5' | -66 | NC_001806.1 | + | 21497 | 0.67 | 0.462329 |
Target: 5'- gCCGCCgGCGaccGGGcccCGGCCCggggccgcgaaCGGGAGg -3' miRNA: 3'- -GGCGGgCGC---CCCu--GCCGGG-----------GCCUUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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