miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5537 5' -66 NC_001806.1 + 132503 0.66 0.497278
Target:  5'- gCCGCCCcCGGGGcccUGGCCCCc----- -3'
miRNA:   3'- -GGCGGGcGCCCCu--GCCGGGGccuuca -5'
5537 5' -66 NC_001806.1 + 38802 0.66 0.497278
Target:  5'- uCCGCuuCCGCGGGGAccCGGg--CGGggGUg -3'
miRNA:   3'- -GGCG--GGCGCCCCU--GCCgggGCCuuCA- -5'
5537 5' -66 NC_001806.1 + 22571 0.66 0.497278
Target:  5'- -gGgCCGCGGGGA--GCCCCGGc--- -3'
miRNA:   3'- ggCgGGCGCCCCUgcCGGGGCCuuca -5'
5537 5' -66 NC_001806.1 + 35122 0.66 0.497278
Target:  5'- gCGuCCCGUGGacGCGGCCCuCGGuuGg -3'
miRNA:   3'- gGC-GGGCGCCccUGCCGGG-GCCuuCa -5'
5537 5' -66 NC_001806.1 + 93580 0.66 0.488425
Target:  5'- gCCGUUCgGCGGcccGGgGGCCCCGGGAc- -3'
miRNA:   3'- -GGCGGG-CGCCc--CUgCCGGGGCCUUca -5'
5537 5' -66 NC_001806.1 + 46189 0.66 0.483149
Target:  5'- cCCGaaCCCaGCGGGuGgcgacuaaggcccccGCGGCCCCGGcGGc -3'
miRNA:   3'- -GGC--GGG-CGCCC-C---------------UGCCGGGGCCuUCa -5'
5537 5' -66 NC_001806.1 + 77937 0.66 0.479647
Target:  5'- -gGCCCaGCuggaauGGGGgggugacgcgGCGGCCCCGGGGc- -3'
miRNA:   3'- ggCGGG-CG------CCCC----------UGCCGGGGCCUUca -5'
5537 5' -66 NC_001806.1 + 93460 0.66 0.479647
Target:  5'- gUGgUCGaCGGacGCGGCCCUGGAGGUg -3'
miRNA:   3'- gGCgGGC-GCCccUGCCGGGGCCUUCA- -5'
5537 5' -66 NC_001806.1 + 23937 0.66 0.479647
Target:  5'- gCCGgCgGCGGGGccugggGgGGCCgCCGGAguGGUc -3'
miRNA:   3'- -GGCgGgCGCCCC------UgCCGG-GGCCU--UCA- -5'
5537 5' -66 NC_001806.1 + 68572 0.66 0.479647
Target:  5'- gCCgGCCUGCGcaccGcGGCGGCCCUGGGgccGGUc -3'
miRNA:   3'- -GG-CGGGCGCc---C-CUGCCGGGGCCU---UCA- -5'
5537 5' -66 NC_001806.1 + 115652 0.66 0.479647
Target:  5'- gUGCCCGCaacGGGGAa-GCCCacgcgCGGGAGa -3'
miRNA:   3'- gGCGGGCG---CCCCUgcCGGG-----GCCUUCa -5'
5537 5' -66 NC_001806.1 + 27315 0.66 0.479647
Target:  5'- gCGUCCGCcgagucuucGGGGccCGGCCCauugggCGGGAGUu -3'
miRNA:   3'- gGCGGGCG---------CCCCu-GCCGGG------GCCUUCA- -5'
5537 5' -66 NC_001806.1 + 86380 0.66 0.474418
Target:  5'- uCC-UCCGCGGGGcgcucggcuaacgcgGCGGCCgcuCCGGAgacGGUa -3'
miRNA:   3'- -GGcGGGCGCCCC---------------UGCCGG---GGCCU---UCA- -5'
5537 5' -66 NC_001806.1 + 20178 0.66 0.470948
Target:  5'- cCCGCCCcCGGGGcCGGCg-CGGAGu- -3'
miRNA:   3'- -GGCGGGcGCCCCuGCCGggGCCUUca -5'
5537 5' -66 NC_001806.1 + 95434 0.66 0.470948
Target:  5'- -gGCCCGgGGGGcaGgGGCCCgagacgUGGggGg -3'
miRNA:   3'- ggCGGGCgCCCC--UgCCGGG------GCCuuCa -5'
5537 5' -66 NC_001806.1 + 147739 0.66 0.470948
Target:  5'- aCgGCCgCGCGGGGGCgcgcgGGUCCCGa---- -3'
miRNA:   3'- -GgCGG-GCGCCCCUG-----CCGGGGCcuuca -5'
5537 5' -66 NC_001806.1 + 27230 0.66 0.470948
Target:  5'- gCCaGCCCGCccucacagGGcGGGCcGCCUCGGggGc -3'
miRNA:   3'- -GG-CGGGCG--------CC-CCUGcCGGGGCCuuCa -5'
5537 5' -66 NC_001806.1 + 3535 0.66 0.470948
Target:  5'- gCCcCCCGCGGGGgagGCGGgCgCGGcGGa -3'
miRNA:   3'- -GGcGGGCGCCCC---UGCCgGgGCCuUCa -5'
5537 5' -66 NC_001806.1 + 83952 0.66 0.470948
Target:  5'- gCCGCUCGCaacGGGGAauucgagaCGGUCgCCGGGGa- -3'
miRNA:   3'- -GGCGGGCG---CCCCU--------GCCGG-GGCCUUca -5'
5537 5' -66 NC_001806.1 + 33002 0.67 0.462329
Target:  5'- gCCGCCa-CGGGGGcCGGCCgUUGGcGGUa -3'
miRNA:   3'- -GGCGGgcGCCCCU-GCCGG-GGCCuUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.