Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5539 | 3' | -65.2 | NC_001806.1 | + | 5893 | 0.67 | 0.396314 |
Target: 5'- -gCGGGCGGCCCaaGGGCCGCccGCcUUGc -3' miRNA: 3'- caGUCCGUCGGG--CCCGGCGc-CGaGAC- -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 69860 | 0.67 | 0.390693 |
Target: 5'- cUCGGGCAGCCCagccacgcccccucuGuccaccuGGCCGCGGCg--- -3' miRNA: 3'- cAGUCCGUCGGG---------------C-------CCGGCGCCGagac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 72692 | 0.67 | 0.388301 |
Target: 5'- aUCGGGC-GCCCgacgauguauGGGCgGUGGCcCUGa -3' miRNA: 3'- cAGUCCGuCGGG----------CCCGgCGCCGaGAC- -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 57025 | 0.68 | 0.380395 |
Target: 5'- -cCAGGCacuggguggccgGGCCCgGGGCCGgGGCccccggCUGc -3' miRNA: 3'- caGUCCG------------UCGGG-CCCGGCgCCGa-----GAC- -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 24329 | 0.68 | 0.357332 |
Target: 5'- -aCGGuGCuGGCCuCGGGCCGCGuGUUCg- -3' miRNA: 3'- caGUC-CG-UCGG-GCCCGGCGC-CGAGac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 75983 | 0.68 | 0.349866 |
Target: 5'- --gAGcGCGGCCUucgGGGCCGCGGC-Cg- -3' miRNA: 3'- cagUC-CGUCGGG---CCCGGCGCCGaGac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 56520 | 0.68 | 0.349866 |
Target: 5'- ---cGGCAgGCCCGGGCC-CGGCg--- -3' miRNA: 3'- caguCCGU-CGGGCCCGGcGCCGagac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 4743 | 0.68 | 0.349866 |
Target: 5'- -cCGGGCcggGGCCCGGucGCCGgCGGCgucggCUGc -3' miRNA: 3'- caGUCCG---UCGGGCC--CGGC-GCCGa----GAC- -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 6080 | 0.69 | 0.335268 |
Target: 5'- --gGGGCgGGCCCGGGCgGCGGggggcggguCUCUc -3' miRNA: 3'- cagUCCG-UCGGGCCCGgCGCC---------GAGAc -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 131965 | 0.69 | 0.333118 |
Target: 5'- cGUCcuGGCGGCCCuggagcgccagaccGGGCCGgUGGCcCUGu -3' miRNA: 3'- -CAGu-CCGUCGGG--------------CCCGGC-GCCGaGAC- -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 115114 | 0.69 | 0.314217 |
Target: 5'- uUCGGGUGcGCCCaGGuGCCGCGGCg--- -3' miRNA: 3'- cAGUCCGU-CGGG-CC-CGGCGCCGagac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 4190 | 0.69 | 0.314217 |
Target: 5'- --gGGGCccGGCgCCGGGCCaCGGCUCc- -3' miRNA: 3'- cagUCCG--UCG-GGCCCGGcGCCGAGac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 33364 | 0.69 | 0.300746 |
Target: 5'- --aGGGgGGCCCGGagaGCCGCGGCa--- -3' miRNA: 3'- cagUCCgUCGGGCC---CGGCGCCGagac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 4427 | 0.69 | 0.29418 |
Target: 5'- --gGGGUGGCCCGGGCgGgGGCg--- -3' miRNA: 3'- cagUCCGUCGGGCCCGgCgCCGagac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 136534 | 0.69 | 0.29418 |
Target: 5'- -aCGGGCcGCUCGGGCCGCccGGCg--- -3' miRNA: 3'- caGUCCGuCGGGCCCGGCG--CCGagac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 5104 | 0.69 | 0.29418 |
Target: 5'- cGUCGGuGgGGCCCGGggaGCCGgGGCgCUGc -3' miRNA: 3'- -CAGUC-CgUCGGGCC---CGGCgCCGaGAC- -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 2940 | 0.7 | 0.287726 |
Target: 5'- -cCGGGCGGCcgggCCGGGCCG-GGaCUCUu -3' miRNA: 3'- caGUCCGUCG----GGCCCGGCgCC-GAGAc -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 28017 | 0.7 | 0.263025 |
Target: 5'- -cCAGGCAGaCUCGGGCCGCcccCUCUc -3' miRNA: 3'- caGUCCGUC-GGGCCCGGCGcc-GAGAc -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 86661 | 0.71 | 0.251334 |
Target: 5'- cGUCAgcccGGCGGCCgUGaGGCCGCGGCa--- -3' miRNA: 3'- -CAGU----CCGUCGG-GC-CCGGCGCCGagac -5' |
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5539 | 3' | -65.2 | NC_001806.1 | + | 59142 | 0.71 | 0.245651 |
Target: 5'- --aGGGCAG-CCGGGCCGgGGuCUCg- -3' miRNA: 3'- cagUCCGUCgGGCCCGGCgCC-GAGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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