miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5540 3' -64.1 NC_001806.1 + 146079 1.06 0.000853
Target:  5'- cCAGGUCAGUCCGGGCGGGCAGGCGCUc -3'
miRNA:   3'- -GUCCAGUCAGGCCCGCCCGUCCGCGA- -5'
5540 3' -64.1 NC_001806.1 + 25906 0.77 0.113745
Target:  5'- gCGGGcggCGGUCCGGGCGgcgugcgcgcgcgcGGCGGGCGUg -3'
miRNA:   3'- -GUCCa--GUCAGGCCCGC--------------CCGUCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 2726 0.75 0.157883
Target:  5'- gGGGUCGGggCCcucGGCGGGCcGGCGCg -3'
miRNA:   3'- gUCCAGUCa-GGc--CCGCCCGuCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 148395 0.74 0.178159
Target:  5'- -uGGUgGGcUCCGGGUGGGUGGGCGaCa -3'
miRNA:   3'- guCCAgUC-AGGCCCGCCCGUCCGC-Ga -5'
5540 3' -64.1 NC_001806.1 + 34421 0.72 0.241948
Target:  5'- cCGGGcCGGgCCGGGcCGGGUGGGCGg- -3'
miRNA:   3'- -GUCCaGUCaGGCCC-GCCCGUCCGCga -5'
5540 3' -64.1 NC_001806.1 + 99640 0.71 0.277324
Target:  5'- gGGGgcgguggCGGgCCuGGCGGGCAGGCaGCUg -3'
miRNA:   3'- gUCCa------GUCaGGcCCGCCCGUCCG-CGA- -5'
5540 3' -64.1 NC_001806.1 + 151444 0.7 0.323665
Target:  5'- gCGGGgggCGGcggCgGGGCGGccGCGGGCGCg -3'
miRNA:   3'- -GUCCa--GUCa--GgCCCGCC--CGUCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 4659 0.7 0.323665
Target:  5'- -cGG-CGG-CUGGGCcGGCGGGCGCg -3'
miRNA:   3'- guCCaGUCaGGCCCGcCCGUCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 3526 0.69 0.345223
Target:  5'- gGGGUC-GUCgccccccgCGGGgGaGGCGGGCGCg -3'
miRNA:   3'- gUCCAGuCAG--------GCCCgC-CCGUCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 127726 0.69 0.367793
Target:  5'- gGGGUCuuccgcauauucGGaaucCCGGGCGGGCugccGGGUGCg -3'
miRNA:   3'- gUCCAG------------UCa---GGCCCGCCCG----UCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 100722 0.69 0.375537
Target:  5'- uGGGUCAGcgccuccacgCCGGGCGccCAGGUGCg -3'
miRNA:   3'- gUCCAGUCa---------GGCCCGCccGUCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 42640 0.69 0.375537
Target:  5'- gCGGcGUCGcGUCCGGuGCggGGGCuGGCGUUg -3'
miRNA:   3'- -GUC-CAGU-CAGGCC-CG--CCCGuCCGCGA- -5'
5540 3' -64.1 NC_001806.1 + 4427 0.69 0.375537
Target:  5'- gGGGU-GGcCCGGGCGGGgGcGGCGUc -3'
miRNA:   3'- gUCCAgUCaGGCCCGCCCgU-CCGCGa -5'
5540 3' -64.1 NC_001806.1 + 20714 0.69 0.375537
Target:  5'- gGGGUgGGcccgCCGGGgGGGCGGGgGg- -3'
miRNA:   3'- gUCCAgUCa---GGCCCgCCCGUCCgCga -5'
5540 3' -64.1 NC_001806.1 + 100372 0.69 0.386564
Target:  5'- aCAGGUagcucccgucgCCGGGCGGcGCGGGgGCc -3'
miRNA:   3'- -GUCCAguca-------GGCCCGCC-CGUCCgCGa -5'
5540 3' -64.1 NC_001806.1 + 151102 0.68 0.432743
Target:  5'- gGGGUCgcgggGGUCgCGGG-GGGCuccGGCGCc -3'
miRNA:   3'- gUCCAG-----UCAG-GCCCgCCCGu--CCGCGa -5'
5540 3' -64.1 NC_001806.1 + 33987 0.68 0.432743
Target:  5'- gGGGUCg--CCGGGgcagGGGCGGGgGCg -3'
miRNA:   3'- gUCCAGucaGGCCCg---CCCGUCCgCGa -5'
5540 3' -64.1 NC_001806.1 + 151549 0.68 0.432743
Target:  5'- cCGGG-CGG-CCGGGgGcGGCGGGgGCc -3'
miRNA:   3'- -GUCCaGUCaGGCCCgC-CCGUCCgCGa -5'
5540 3' -64.1 NC_001806.1 + 113750 0.68 0.441323
Target:  5'- -cGGccCGGagCUGGGCGGGCAGG-GCa -3'
miRNA:   3'- guCCa-GUCa-GGCCCGCCCGUCCgCGa -5'
5540 3' -64.1 NC_001806.1 + 9191 0.67 0.467625
Target:  5'- cCGGG--GGUCgCGGGUGuGGCgaGGGCGCg -3'
miRNA:   3'- -GUCCagUCAG-GCCCGC-CCG--UCCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.