miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5540 3' -64.1 NC_001806.1 + 794 0.66 0.54134
Target:  5'- uCAGGUCAGagauccaaacccUCCGGG-GGcGCccGCGCa -3'
miRNA:   3'- -GUCCAGUC------------AGGCCCgCC-CGucCGCGa -5'
5540 3' -64.1 NC_001806.1 + 2641 0.67 0.485601
Target:  5'- gCGGGgagCAGuaggccUCCaGGGCGGcggccGCGGGCGCc -3'
miRNA:   3'- -GUCCa--GUC------AGG-CCCGCC-----CGUCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 2726 0.75 0.157883
Target:  5'- gGGGUCGGggCCcucGGCGGGCcGGCGCg -3'
miRNA:   3'- gUCCAGUCa-GGc--CCGCCCGuCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 3526 0.69 0.345223
Target:  5'- gGGGUC-GUCgccccccgCGGGgGaGGCGGGCGCg -3'
miRNA:   3'- gUCCAGuCAG--------GCCCgC-CCGUCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 4427 0.69 0.375537
Target:  5'- gGGGU-GGcCCGGGCGGGgGcGGCGUc -3'
miRNA:   3'- gUCCAgUCaGGCCCGCCCgU-CCGCGa -5'
5540 3' -64.1 NC_001806.1 + 4659 0.7 0.323665
Target:  5'- -cGG-CGG-CUGGGCcGGCGGGCGCg -3'
miRNA:   3'- guCCaGUCaGGCCCGcCCGUCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 5057 0.66 0.532828
Target:  5'- gAGGgccccccgcucgucgCGGUCUGGGCucgGGGUGGGCGg- -3'
miRNA:   3'- gUCCa--------------GUCAGGCCCG---CCCGUCCGCga -5'
5540 3' -64.1 NC_001806.1 + 9191 0.67 0.467625
Target:  5'- cCGGG--GGUCgCGGGUGuGGCgaGGGCGCg -3'
miRNA:   3'- -GUCCagUCAG-GCCCGC-CCG--UCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 11462 0.66 0.55085
Target:  5'- gAGcUCGGcUCCGaGGCGGGCcauGGcCGCUu -3'
miRNA:   3'- gUCcAGUC-AGGC-CCGCCCGu--CC-GCGA- -5'
5540 3' -64.1 NC_001806.1 + 15703 0.66 0.51316
Target:  5'- cCAGGcCGGU-CGGGUGuacGGCGGGCGa- -3'
miRNA:   3'- -GUCCaGUCAgGCCCGC---CCGUCCGCga -5'
5540 3' -64.1 NC_001806.1 + 20714 0.69 0.375537
Target:  5'- gGGGUgGGcccgCCGGGgGGGCGGGgGg- -3'
miRNA:   3'- gUCCAgUCa---GGCCCgCCCGUCCgCga -5'
5540 3' -64.1 NC_001806.1 + 22057 0.67 0.467625
Target:  5'- -uGGccCGGcgCCGGGCccccgcccccgGGGCGGGUGCUg -3'
miRNA:   3'- guCCa-GUCa-GGCCCG-----------CCCGUCCGCGA- -5'
5540 3' -64.1 NC_001806.1 + 24027 0.66 0.55085
Target:  5'- gCGGGcCGGacacggccgcCUGGGCGGGCAauuggaccGGCGCc -3'
miRNA:   3'- -GUCCaGUCa---------GGCCCGCCCGU--------CCGCGa -5'
5540 3' -64.1 NC_001806.1 + 24994 0.66 0.521554
Target:  5'- gGGGUgcuguaaCGGgCCGGGacgGGGCGgGGCGCUu -3'
miRNA:   3'- gUCCA-------GUCaGGCCCg--CCCGU-CCGCGA- -5'
5540 3' -64.1 NC_001806.1 + 25863 0.66 0.531885
Target:  5'- -uGG-CAGcCCGGGCcccccGCGGGCGCg -3'
miRNA:   3'- guCCaGUCaGGCCCGcc---CGUCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 25906 0.77 0.113745
Target:  5'- gCGGGcggCGGUCCGGGCGgcgugcgcgcgcgcGGCGGGCGUg -3'
miRNA:   3'- -GUCCa--GUCAGGCCCGC--------------CCGUCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 26700 0.66 0.52249
Target:  5'- cCGGcGUgGGcCCGGG-GGGCGGG-GCUg -3'
miRNA:   3'- -GUC-CAgUCaGGCCCgCCCGUCCgCGA- -5'
5540 3' -64.1 NC_001806.1 + 28178 0.66 0.54134
Target:  5'- gAGGUgAGgggCCGGGCgccaugucugGGGCgccauauugggGGGCGCc -3'
miRNA:   3'- gUCCAgUCa--GGCCCG----------CCCG-----------UCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 31953 0.66 0.51316
Target:  5'- uGGGagGGguggCgGGGCGGGacgGGGCGCc -3'
miRNA:   3'- gUCCagUCa---GgCCCGCCCg--UCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 33987 0.68 0.432743
Target:  5'- gGGGUCg--CCGGGgcagGGGCGGGgGCg -3'
miRNA:   3'- gUCCAGucaGGCCCg---CCCGUCCgCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.