miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5540 3' -64.1 NC_001806.1 + 9191 0.67 0.467625
Target:  5'- cCGGG--GGUCgCGGGUGuGGCgaGGGCGCg -3'
miRNA:   3'- -GUCCagUCAG-GCCCGC-CCG--UCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 22057 0.67 0.467625
Target:  5'- -uGGccCGGcgCCGGGCccccgcccccgGGGCGGGUGCUg -3'
miRNA:   3'- guCCa-GUCa-GGCCCG-----------CCCGUCCGCGA- -5'
5540 3' -64.1 NC_001806.1 + 89258 0.67 0.475673
Target:  5'- gGGGUCcccggcuGGcUCCgcgaGGGCcGGCGGGCGCa -3'
miRNA:   3'- gUCCAG-------UC-AGG----CCCGcCCGUCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 148191 0.67 0.476571
Target:  5'- gCGGGgc-GUCCGgcGGgGGGCGGGCGgUa -3'
miRNA:   3'- -GUCCaguCAGGC--CCgCCCGUCCGCgA- -5'
5540 3' -64.1 NC_001806.1 + 2641 0.67 0.485601
Target:  5'- gCGGGgagCAGuaggccUCCaGGGCGGcggccGCGGGCGCc -3'
miRNA:   3'- -GUCCa--GUC------AGG-CCCGCC-----CGUCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 135584 0.67 0.485601
Target:  5'- cCAGGUCGG-CCGcGCGcuGCuGGCGCUc -3'
miRNA:   3'- -GUCCAGUCaGGCcCGCc-CGuCCGCGA- -5'
5540 3' -64.1 NC_001806.1 + 101400 0.67 0.494712
Target:  5'- -cGGUCGGg--GGGCGGGCggaaAGGCGa- -3'
miRNA:   3'- guCCAGUCaggCCCGCCCG----UCCGCga -5'
5540 3' -64.1 NC_001806.1 + 83276 0.66 0.502977
Target:  5'- gAGGg-GGUUCGGGCGGGCGcGGaggacccCGCa -3'
miRNA:   3'- gUCCagUCAGGCCCGCCCGU-CC-------GCGa -5'
5540 3' -64.1 NC_001806.1 + 31953 0.66 0.51316
Target:  5'- uGGGagGGguggCgGGGCGGGacgGGGCGCc -3'
miRNA:   3'- gUCCagUCa---GgCCCGCCCg--UCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 34775 0.66 0.51316
Target:  5'- gCGGGgCGGUUCGGGgGGGgGGGgGg- -3'
miRNA:   3'- -GUCCaGUCAGGCCCgCCCgUCCgCga -5'
5540 3' -64.1 NC_001806.1 + 77375 0.66 0.51316
Target:  5'- aCAGGcCAGaCgGGcGCGGGCGcGGCGg- -3'
miRNA:   3'- -GUCCaGUCaGgCC-CGCCCGU-CCGCga -5'
5540 3' -64.1 NC_001806.1 + 15703 0.66 0.51316
Target:  5'- cCAGGcCGGU-CGGGUGuacGGCGGGCGa- -3'
miRNA:   3'- -GUCCaGUCAgGCCCGC---CCGUCCGCga -5'
5540 3' -64.1 NC_001806.1 + 24994 0.66 0.521554
Target:  5'- gGGGUgcuguaaCGGgCCGGGacgGGGCGgGGCGCUu -3'
miRNA:   3'- gUCCA-------GUCaGGCCCg--CCCGU-CCGCGA- -5'
5540 3' -64.1 NC_001806.1 + 45306 0.66 0.52249
Target:  5'- gCGGGgagCcGcCCGGcGaggaGGGCGGGCGCg -3'
miRNA:   3'- -GUCCa--GuCaGGCC-Cg---CCCGUCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 26700 0.66 0.52249
Target:  5'- cCGGcGUgGGcCCGGG-GGGCGGG-GCUg -3'
miRNA:   3'- -GUC-CAgUCaGGCCCgCCCGUCCgCGA- -5'
5540 3' -64.1 NC_001806.1 + 25863 0.66 0.531885
Target:  5'- -uGG-CAGcCCGGGCcccccGCGGGCGCg -3'
miRNA:   3'- guCCaGUCaGGCCCGcc---CGUCCGCGa -5'
5540 3' -64.1 NC_001806.1 + 110968 0.66 0.531885
Target:  5'- --cGUCGG-CUacuacguuacguGGGCGGuGCGGGCGCUc -3'
miRNA:   3'- gucCAGUCaGG------------CCCGCC-CGUCCGCGA- -5'
5540 3' -64.1 NC_001806.1 + 5057 0.66 0.532828
Target:  5'- gAGGgccccccgcucgucgCGGUCUGGGCucgGGGUGGGCGg- -3'
miRNA:   3'- gUCCa--------------GUCAGGCCCG---CCCGUCCGCga -5'
5540 3' -64.1 NC_001806.1 + 794 0.66 0.54134
Target:  5'- uCAGGUCAGagauccaaacccUCCGGG-GGcGCccGCGCa -3'
miRNA:   3'- -GUCCAGUC------------AGGCCCgCC-CGucCGCGa -5'
5540 3' -64.1 NC_001806.1 + 28178 0.66 0.54134
Target:  5'- gAGGUgAGgggCCGGGCgccaugucugGGGCgccauauugggGGGCGCc -3'
miRNA:   3'- gUCCAgUCa--GGCCCG----------CCCG-----------UCCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.