miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5542 3' -54.3 NC_001806.1 + 25135 0.67 0.934278
Target:  5'- gCGGGaGGggGCGAGGGGCgggaggGGGCg -3'
miRNA:   3'- -GCCCaCCa-CGCUUUCUGaaagg-CCCG- -5'
5542 3' -54.3 NC_001806.1 + 25169 0.67 0.934278
Target:  5'- gCGGGaGGggGCGAGGGGCgggaggGGGCg -3'
miRNA:   3'- -GCCCaCCa-CGCUUUCUGaaagg-CCCG- -5'
5542 3' -54.3 NC_001806.1 + 25237 0.67 0.934278
Target:  5'- gCGGGaGGggGCGAGGGGCgggaggGGGCg -3'
miRNA:   3'- -GCCCaCCa-CGCUUUCUGaaagg-CCCG- -5'
5542 3' -54.3 NC_001806.1 + 25271 0.67 0.934278
Target:  5'- gCGGGaGGggGCGAGGGGCgggaggGGGCg -3'
miRNA:   3'- -GCCCaCCa-CGCUUUCUGaaagg-CCCG- -5'
5542 3' -54.3 NC_001806.1 + 25305 0.67 0.934278
Target:  5'- gCGGGaGGggGCGAGGGGCgggaggGGGCg -3'
miRNA:   3'- -GCCCaCCa-CGCUUUCUGaaagg-CCCG- -5'
5542 3' -54.3 NC_001806.1 + 25339 0.67 0.934278
Target:  5'- gCGGGaGGggGCGAGGGGCgggaggGGGCg -3'
miRNA:   3'- -GCCCaCCa-CGCUUUCUGaaagg-CCCG- -5'
5542 3' -54.3 NC_001806.1 + 59121 0.67 0.934278
Target:  5'- aCGaGGUGGgcuucgGUGGugAGGGCag-CCGGGCc -3'
miRNA:   3'- -GC-CCACCa-----CGCU--UUCUGaaaGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 144584 0.67 0.934278
Target:  5'- cCGGGUGccGCG----GCUcUCCGGGCc -3'
miRNA:   3'- -GCCCACcaCGCuuucUGAaAGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 25203 0.67 0.934278
Target:  5'- gCGGGaGGggGCGAGGGGCgggaggGGGCg -3'
miRNA:   3'- -GCCCaCCa-CGCUUUCUGaaagg-CCCG- -5'
5542 3' -54.3 NC_001806.1 + 151430 0.67 0.929165
Target:  5'- gCGGG-GGcccaccgGCGggGGGCggcggCgGGGCg -3'
miRNA:   3'- -GCCCaCCa------CGCuuUCUGaaa--GgCCCG- -5'
5542 3' -54.3 NC_001806.1 + 57829 0.67 0.927584
Target:  5'- gCGGG-GGUGCGguGGGCgaccccgucuuaggUUUCUuuaGGGCc -3'
miRNA:   3'- -GCCCaCCACGCuuUCUG--------------AAAGG---CCCG- -5'
5542 3' -54.3 NC_001806.1 + 74062 0.67 0.923812
Target:  5'- gGaGGaGGUGCGGAcccAGGCccgUCGGGCg -3'
miRNA:   3'- gC-CCaCCACGCUU---UCUGaaaGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 29677 0.67 0.918218
Target:  5'- gCGGGcGG-GCGAggaaAGGGCgggCCGGGg -3'
miRNA:   3'- -GCCCaCCaCGCU----UUCUGaaaGGCCCg -5'
5542 3' -54.3 NC_001806.1 + 34061 0.68 0.912385
Target:  5'- uGGGUGGgagaagGCGAgGAGACUg---GGGUg -3'
miRNA:   3'- gCCCACCa-----CGCU-UUCUGAaaggCCCG- -5'
5542 3' -54.3 NC_001806.1 + 25567 0.68 0.906313
Target:  5'- aGGGcUGGggccGgGGAGGGCUggggCCGGGg -3'
miRNA:   3'- gCCC-ACCa---CgCUUUCUGAaa--GGCCCg -5'
5542 3' -54.3 NC_001806.1 + 25599 0.68 0.906313
Target:  5'- aGGGcUGGggccGgGGAGGGCUggggCCGGGg -3'
miRNA:   3'- gCCC-ACCa---CgCUUUCUGAaa--GGCCCg -5'
5542 3' -54.3 NC_001806.1 + 83258 0.68 0.906313
Target:  5'- gCGGGgGG-GCGGgcGACggagggggUUCGGGCg -3'
miRNA:   3'- -GCCCaCCaCGCUuuCUGaa------AGGCCCG- -5'
5542 3' -54.3 NC_001806.1 + 25535 0.68 0.906313
Target:  5'- aGGGcUGGggccGgGGAGGGCUggggCCGGGg -3'
miRNA:   3'- gCCC-ACCa---CgCUUUCUGAaa--GGCCCg -5'
5542 3' -54.3 NC_001806.1 + 146828 0.68 0.900005
Target:  5'- uCGGGgagcagGGUGCGGc-GGCUccagCCGGGg -3'
miRNA:   3'- -GCCCa-----CCACGCUuuCUGAaa--GGCCCg -5'
5542 3' -54.3 NC_001806.1 + 33815 0.68 0.893464
Target:  5'- gCGGGUGGacucGCGggGGGCcgga-GGGUg -3'
miRNA:   3'- -GCCCACCa---CGCuuUCUGaaaggCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.