miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5542 5' -67.5 NC_001806.1 + 3344 0.66 0.41197
Target:  5'- -gGCCGCGGggggcuggCgggCCGGGCCCCggCCa- -3'
miRNA:   3'- caCGGCGCCga------Ga--GGCCCGGGG--GGac -5'
5542 5' -67.5 NC_001806.1 + 78280 0.66 0.41197
Target:  5'- -cGCCGCGGCaaguUgUCCGaaaccgaCCCCCUGg -3'
miRNA:   3'- caCGGCGCCG----AgAGGCccg----GGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 49645 0.66 0.403913
Target:  5'- cGUGCCG-GGCccggagCUCCGGGCggcauuCCCgUUGg -3'
miRNA:   3'- -CACGGCgCCGa-----GAGGCCCG------GGGgGAC- -5'
5542 5' -67.5 NC_001806.1 + 72408 0.66 0.402313
Target:  5'- -gGCCGCGGCUCUgcaucuuuaCgGGGCCagcgagacuuaCCUGc -3'
miRNA:   3'- caCGGCGCCGAGA---------GgCCCGGgg---------GGAC- -5'
5542 5' -67.5 NC_001806.1 + 84881 0.66 0.393588
Target:  5'- -gGCCgGCGGgaCUCugggcguggugcguCGGGCCUCCCg- -3'
miRNA:   3'- caCGG-CGCCgaGAG--------------GCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 23372 0.66 0.3881
Target:  5'- -cGCCccCGGCUCggacgcCCGcGCCCCCCUc -3'
miRNA:   3'- caCGGc-GCCGAGa-----GGCcCGGGGGGAc -5'
5542 5' -67.5 NC_001806.1 + 146839 0.66 0.3881
Target:  5'- gGUGCgGCGGCUCcagCCGGGgaCCgcggCCCg- -3'
miRNA:   3'- -CACGgCGCCGAGa--GGCCCg-GG----GGGac -5'
5542 5' -67.5 NC_001806.1 + 146198 0.66 0.380348
Target:  5'- -gGCCGCGGCUCUgUGGuuaacaccagaGCCUgCCCa- -3'
miRNA:   3'- caCGGCGCCGAGAgGCC-----------CGGG-GGGac -5'
5542 5' -67.5 NC_001806.1 + 16499 0.66 0.380348
Target:  5'- -cGCCGCGGCUga-UGGcucgagccGCCUCCCUGu -3'
miRNA:   3'- caCGGCGCCGAgagGCC--------CGGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 38662 0.66 0.371941
Target:  5'- gGUGCCGgggcCGGCUCUCCcaaaccccuccucGuuccGCCCCCCg- -3'
miRNA:   3'- -CACGGC----GCCGAGAGG-------------Cc---CGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 149656 0.66 0.365157
Target:  5'- -cGCC-CGGCUC-CCguguaugaguggGGGUCCCCCa- -3'
miRNA:   3'- caCGGcGCCGAGaGG------------CCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 29961 0.67 0.35772
Target:  5'- -aGCCGCGGCg--CCGcggggggcgucuGGCCCCuCCg- -3'
miRNA:   3'- caCGGCGCCGagaGGC------------CCGGGG-GGac -5'
5542 5' -67.5 NC_001806.1 + 39190 0.67 0.356982
Target:  5'- -gGCgGCGGCcuugUCUgcguucuugggggCCGGGCCCCgCCg- -3'
miRNA:   3'- caCGgCGCCG----AGA-------------GGCCCGGGG-GGac -5'
5542 5' -67.5 NC_001806.1 + 94175 0.67 0.35039
Target:  5'- -cGCUGCGGCgUCgucugaggCCGGGCCUggaggCCCa- -3'
miRNA:   3'- caCGGCGCCG-AGa-------GGCCCGGG-----GGGac -5'
5542 5' -67.5 NC_001806.1 + 73945 0.67 0.35039
Target:  5'- -cGaCGCGGuCUCacagcacgCCGGGCCCCUCg- -3'
miRNA:   3'- caCgGCGCC-GAGa-------GGCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 33135 0.67 0.35039
Target:  5'- -cGCCGCGG-UCgg-GGGCCCCUCg- -3'
miRNA:   3'- caCGGCGCCgAGaggCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 31769 0.67 0.343168
Target:  5'- -aGCCGCGGC---CCGGGCUgCCUg- -3'
miRNA:   3'- caCGGCGCCGagaGGCCCGGgGGGac -5'
5542 5' -67.5 NC_001806.1 + 32680 0.67 0.336053
Target:  5'- aGUGgCGUGGCcgaccuuagcCUCUgGGGCgCCCCCUGu -3'
miRNA:   3'- -CACgGCGCCGa---------GAGG-CCCG-GGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 135780 0.67 0.336053
Target:  5'- -aGCUGCGGCgC-CCGc-CCCCCCUGg -3'
miRNA:   3'- caCGGCGCCGaGaGGCccGGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 6829 0.67 0.331837
Target:  5'- cUGCUGC-GCUCUcCCGGGCugcugcccgaaaucgCCCCCa- -3'
miRNA:   3'- cACGGCGcCGAGA-GGCCCG---------------GGGGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.