miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5542 5' -67.5 NC_001806.1 + 67482 0.68 0.302107
Target:  5'- cGUGCUgGCcGCcCUCCGGGgucccgaCCCCCUGg -3'
miRNA:   3'- -CACGG-CGcCGaGAGGCCCg------GGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 59617 0.68 0.302107
Target:  5'- -cGCCGgGGC-CUUgGGGCCCCggCCg- -3'
miRNA:   3'- caCGGCgCCGaGAGgCCCGGGG--GGac -5'
5542 5' -67.5 NC_001806.1 + 38394 0.68 0.308679
Target:  5'- -cGCgGCGGCUCUCCgccggcucggggGGGUCCUCg-- -3'
miRNA:   3'- caCGgCGCCGAGAGG------------CCCGGGGGgac -5'
5542 5' -67.5 NC_001806.1 + 135866 0.68 0.31536
Target:  5'- -gGCCGgGGCgUCUaucaGGuGCCCCCCg- -3'
miRNA:   3'- caCGGCgCCG-AGAgg--CC-CGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 23105 0.68 0.31536
Target:  5'- -cGCCGgGGC-C-CUGGGCCCCgCgCUGc -3'
miRNA:   3'- caCGGCgCCGaGaGGCCCGGGG-G-GAC- -5'
5542 5' -67.5 NC_001806.1 + 123754 0.68 0.31536
Target:  5'- ---aCGgGGC-CUCCGGGCgCCCCa- -3'
miRNA:   3'- cacgGCgCCGaGAGGCCCGgGGGGac -5'
5542 5' -67.5 NC_001806.1 + 106691 0.67 0.322149
Target:  5'- --cCCgGgGGCUCUucCCGGGCCCCCg-- -3'
miRNA:   3'- cacGG-CgCCGAGA--GGCCCGGGGGgac -5'
5542 5' -67.5 NC_001806.1 + 143413 0.67 0.322149
Target:  5'- -gGUCGCGGCUCUUacgaGcGGCCCggCCCg- -3'
miRNA:   3'- caCGGCGCCGAGAGg---C-CCGGG--GGGac -5'
5542 5' -67.5 NC_001806.1 + 125869 0.67 0.329047
Target:  5'- -cGCCGUGGCgC-CCcGGCCCCUCa- -3'
miRNA:   3'- caCGGCGCCGaGaGGcCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 6829 0.67 0.331837
Target:  5'- cUGCUGC-GCUCUcCCGGGCugcugcccgaaaucgCCCCCa- -3'
miRNA:   3'- cACGGCGcCGAGA-GGCCCG---------------GGGGGac -5'
5542 5' -67.5 NC_001806.1 + 32680 0.67 0.336053
Target:  5'- aGUGgCGUGGCcgaccuuagcCUCUgGGGCgCCCCCUGu -3'
miRNA:   3'- -CACgGCGCCGa---------GAGG-CCCG-GGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 135780 0.67 0.336053
Target:  5'- -aGCUGCGGCgC-CCGc-CCCCCCUGg -3'
miRNA:   3'- caCGGCGCCGaGaGGCccGGGGGGAC- -5'
5542 5' -67.5 NC_001806.1 + 31769 0.67 0.343168
Target:  5'- -aGCCGCGGC---CCGGGCUgCCUg- -3'
miRNA:   3'- caCGGCGCCGagaGGCCCGGgGGGac -5'
5542 5' -67.5 NC_001806.1 + 33135 0.67 0.35039
Target:  5'- -cGCCGCGG-UCgg-GGGCCCCUCg- -3'
miRNA:   3'- caCGGCGCCgAGaggCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 94175 0.67 0.35039
Target:  5'- -cGCUGCGGCgUCgucugaggCCGGGCCUggaggCCCa- -3'
miRNA:   3'- caCGGCGCCG-AGa-------GGCCCGGG-----GGGac -5'
5542 5' -67.5 NC_001806.1 + 73945 0.67 0.35039
Target:  5'- -cGaCGCGGuCUCacagcacgCCGGGCCCCUCg- -3'
miRNA:   3'- caCgGCGCC-GAGa-------GGCCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 39190 0.67 0.356982
Target:  5'- -gGCgGCGGCcuugUCUgcguucuugggggCCGGGCCCCgCCg- -3'
miRNA:   3'- caCGgCGCCG----AGA-------------GGCCCGGGG-GGac -5'
5542 5' -67.5 NC_001806.1 + 29961 0.67 0.35772
Target:  5'- -aGCCGCGGCg--CCGcggggggcgucuGGCCCCuCCg- -3'
miRNA:   3'- caCGGCGCCGagaGGC------------CCGGGG-GGac -5'
5542 5' -67.5 NC_001806.1 + 149656 0.66 0.365157
Target:  5'- -cGCC-CGGCUC-CCguguaugaguggGGGUCCCCCa- -3'
miRNA:   3'- caCGGcGCCGAGaGG------------CCCGGGGGGac -5'
5542 5' -67.5 NC_001806.1 + 38662 0.66 0.371941
Target:  5'- gGUGCCGgggcCGGCUCUCCcaaaccccuccucGuuccGCCCCCCg- -3'
miRNA:   3'- -CACGGC----GCCGAGAGG-------------Cc---CGGGGGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.