miRNA display CGI


Results 61 - 80 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5544 3' -62 NC_001806.1 + 113381 0.67 0.635011
Target:  5'- uCCGGCGGCguuccGGGAcgcCCGGGGcCUGgagCUg -3'
miRNA:   3'- -GGCCGCCG-----UCUU---GGCCCCaGGCa--GGu -5'
5544 3' -62 NC_001806.1 + 30289 0.67 0.644709
Target:  5'- cCCGG-GGCGGAGCCGG---CCGcCCGc -3'
miRNA:   3'- -GGCCgCCGUCUUGGCCccaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 10686 0.67 0.644709
Target:  5'- cCCGGUcGCAGAugggGCCGGGGgggCGUacgCCAu -3'
miRNA:   3'- -GGCCGcCGUCU----UGGCCCCag-GCA---GGU- -5'
5544 3' -62 NC_001806.1 + 86026 0.67 0.644709
Target:  5'- gCCGGggagGGCAGGGCCGcGGGgggggcgggCuCGUCCc -3'
miRNA:   3'- -GGCCg---CCGUCUUGGC-CCCa--------G-GCAGGu -5'
5544 3' -62 NC_001806.1 + 1751 0.66 0.653429
Target:  5'- cCCGGCGGUacucgcgcggGGAcaugggcACCGGcGuGUCCGggCCGa -3'
miRNA:   3'- -GGCCGCCG----------UCU-------UGGCC-C-CAGGCa-GGU- -5'
5544 3' -62 NC_001806.1 + 4439 0.66 0.654397
Target:  5'- gCGGgGGCGGcguccgcCCGGGGgcugCCGgcgCCGc -3'
miRNA:   3'- gGCCgCCGUCuu-----GGCCCCa---GGCa--GGU- -5'
5544 3' -62 NC_001806.1 + 21740 0.66 0.657301
Target:  5'- gCGGCcgaccacgcacgcgaGGCGcGGGCCgucgggcGGGGUCCGUCgAg -3'
miRNA:   3'- gGCCG---------------CCGU-CUUGG-------CCCCAGGCAGgU- -5'
5544 3' -62 NC_001806.1 + 34005 0.66 0.66407
Target:  5'- gCGGgGGCGuGGGCgGGGGUgcUCGUCg- -3'
miRNA:   3'- gGCCgCCGU-CUUGgCCCCA--GGCAGgu -5'
5544 3' -62 NC_001806.1 + 2682 0.66 0.66407
Target:  5'- gCCGuGUGGCuGGGCCccGGGGgcugCCGccgCCAg -3'
miRNA:   3'- -GGC-CGCCGuCUUGG--CCCCa---GGCa--GGU- -5'
5544 3' -62 NC_001806.1 + 37987 0.66 0.66407
Target:  5'- uCUGGgGGCAcgccGGCgGGGGUCCGacaaaCCAu -3'
miRNA:   3'- -GGCCgCCGUc---UUGgCCCCAGGCa----GGU- -5'
5544 3' -62 NC_001806.1 + 56656 0.66 0.667932
Target:  5'- gCCGGCGGCccgugggaucguuggGGggUCGGGGgggaCGggggCCc -3'
miRNA:   3'- -GGCCGCCG---------------UCuuGGCCCCag--GCa---GGu -5'
5544 3' -62 NC_001806.1 + 147890 0.66 0.672755
Target:  5'- -gGGgGGCGGGucuguugACaagGGGGcCCGUCCGg -3'
miRNA:   3'- ggCCgCCGUCU-------UGg--CCCCaGGCAGGU- -5'
5544 3' -62 NC_001806.1 + 150947 0.66 0.673719
Target:  5'- cCCGGCGcCGGAACCGagcccGGUCgGcCCGc -3'
miRNA:   3'- -GGCCGCcGUCUUGGCc----CCAGgCaGGU- -5'
5544 3' -62 NC_001806.1 + 27278 0.66 0.673719
Target:  5'- aUCGGCGGCcgccAGcGCggCGGGGcCCGgCCAa -3'
miRNA:   3'- -GGCCGCCG----UCuUG--GCCCCaGGCaGGU- -5'
5544 3' -62 NC_001806.1 + 68100 0.66 0.673719
Target:  5'- gCCGGgcgucaUGGCAG-ACCGcGGUcucCCGUCCGa -3'
miRNA:   3'- -GGCC------GCCGUCuUGGCcCCA---GGCAGGU- -5'
5544 3' -62 NC_001806.1 + 49452 0.66 0.673719
Target:  5'- cCCGGCaGGgGGGauACCuGGGUcCCGUCg- -3'
miRNA:   3'- -GGCCG-CCgUCU--UGGcCCCA-GGCAGgu -5'
5544 3' -62 NC_001806.1 + 18376 0.66 0.683338
Target:  5'- -aGGCGGUGGAGaagcgcauuuuCCGGcagCCGUCCAg -3'
miRNA:   3'- ggCCGCCGUCUU-----------GGCCccaGGCAGGU- -5'
5544 3' -62 NC_001806.1 + 78672 0.66 0.683338
Target:  5'- gCUGGCGGCAGugcuCCuGGGcgcgcCCGUCg- -3'
miRNA:   3'- -GGCCGCCGUCuu--GGcCCCa----GGCAGgu -5'
5544 3' -62 NC_001806.1 + 5105 0.66 0.683338
Target:  5'- gUCGGUggGGCccggGGAGCCGGGGcgcugcuuguucUCCGacgCCAu -3'
miRNA:   3'- -GGCCG--CCG----UCUUGGCCCC------------AGGCa--GGU- -5'
5544 3' -62 NC_001806.1 + 94541 0.66 0.683338
Target:  5'- -gGGCGGUGGggUCGGGccuuaUCGUCCc -3'
miRNA:   3'- ggCCGCCGUCuuGGCCCca---GGCAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.