Results 1 - 20 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5545 | 5' | -52.4 | NC_001806.1 | + | 141615 | 1.12 | 0.005113 |
Target: 5'- gCCAAGACAUUCCGAAGACUCGGGGGAg -3' miRNA: 3'- -GGUUCUGUAAGGCUUCUGAGCCCCCU- -5' |
|||||||
5545 | 5' | -52.4 | NC_001806.1 | + | 76120 | 0.8 | 0.413088 |
Target: 5'- aCGAGGCcgUCCuacaccugucgGAAGACUUGGGGGGc -3' miRNA: 3'- gGUUCUGuaAGG-----------CUUCUGAGCCCCCU- -5' |
|||||||
5545 | 5' | -52.4 | NC_001806.1 | + | 38384 | 0.77 | 0.546259 |
Target: 5'- uCCAGGuCGUcgcggcggcucUCCGccGGCUCGGGGGGg -3' miRNA: 3'- -GGUUCuGUA-----------AGGCuuCUGAGCCCCCU- -5' |
|||||||
5545 | 5' | -52.4 | NC_001806.1 | + | 77126 | 0.75 | 0.69021 |
Target: 5'- gCCGAG-CGggCCGggGccguggaggaGCUCGGGGGGc -3' miRNA: 3'- -GGUUCuGUaaGGCuuC----------UGAGCCCCCU- -5' |
|||||||
5545 | 5' | -52.4 | NC_001806.1 | + | 129695 | 0.74 | 0.710533 |
Target: 5'- uCC-GGACGccucUCCGGAGGCcCGGGGGGc -3' miRNA: 3'- -GGuUCUGUa---AGGCUUCUGaGCCCCCU- -5' |
|||||||
5545 | 5' | -52.4 | NC_001806.1 | + | 124086 | 0.74 | 0.720597 |
Target: 5'- cCCGGGGC---CCGAAGcUUCGGGGGGu -3' miRNA: 3'- -GGUUCUGuaaGGCUUCuGAGCCCCCU- -5' |
|||||||
5545 | 5' | -52.4 | NC_001806.1 | + | 115233 | 0.72 | 0.824092 |
Target: 5'- cCgGGGACGcgccgCCGggGGCguuuacgCGGGGGAc -3' miRNA: 3'- -GgUUCUGUaa---GGCuuCUGa------GCCCCCU- -5' |
|||||||
5545 | 5' | -52.4 | NC_001806.1 | + | 147278 | 0.72 | 0.832605 |
Target: 5'- gCgGAGGCcg-CCGAGGACgucaGGGGGGu -3' miRNA: 3'- -GgUUCUGuaaGGCUUCUGag--CCCCCU- -5' |
|||||||
5545 | 5' | -52.4 | NC_001806.1 | + | 33993 | 0.71 | 0.849064 |
Target: 5'- gCCGGGGCAggggCGggGGCgugggCGGGGGu -3' miRNA: 3'- -GGUUCUGUaag-GCuuCUGa----GCCCCCu -5' |
|||||||
5545 | 5' | -52.4 | NC_001806.1 | + | 10379 | 0.71 | 0.864717 |
Target: 5'- gCCAAGACc--UCGggGGggCGGGGGGa -3' miRNA: 3'- -GGUUCUGuaaGGCuuCUgaGCCCCCU- -5' |
|||||||
5545 | 5' | -52.4 | NC_001806.1 | + | 150627 | 0.71 | 0.872225 |
Target: 5'- cCCAauGGGCcgggccCCGAAGACUCGGcGGAc -3' miRNA: 3'- -GGU--UCUGuaa---GGCUUCUGAGCCcCCU- -5' |
|||||||
5545 | 5' | -52.4 | NC_001806.1 | + | 151547 | 0.71 | 0.872225 |
Target: 5'- gCCcGGGCgg-CCGggGGCggCGGGGGc -3' miRNA: 3'- -GGuUCUGuaaGGCuuCUGa-GCCCCCu -5' |
|||||||
5545 | 5' | -52.4 | NC_001806.1 | + | 118582 | 0.71 | 0.879513 |
Target: 5'- cCCAcGcCcUUcCCGcGGACUCGGGGGAc -3' miRNA: 3'- -GGUuCuGuAA-GGCuUCUGAGCCCCCU- -5' |
|||||||
5545 | 5' | -52.4 | NC_001806.1 | + | 93273 | 0.71 | 0.879513 |
Target: 5'- uCCGGGGCAUuaucUCCGAGGGCg-GGGcGGc -3' miRNA: 3'- -GGUUCUGUA----AGGCUUCUGagCCC-CCu -5' |
|||||||
5545 | 5' | -52.4 | NC_001806.1 | + | 29118 | 0.7 | 0.886576 |
Target: 5'- gCAGGGCGUggaUGggGGggcgguCUCGGGGGGg -3' miRNA: 3'- gGUUCUGUAag-GCuuCU------GAGCCCCCU- -5' |
|||||||
5545 | 5' | -52.4 | NC_001806.1 | + | 84423 | 0.7 | 0.900007 |
Target: 5'- cCCGAGACGcagcCCGggGA--CGGGGGc -3' miRNA: 3'- -GGUUCUGUaa--GGCuuCUgaGCCCCCu -5' |
|||||||
5545 | 5' | -52.4 | NC_001806.1 | + | 106830 | 0.7 | 0.906368 |
Target: 5'- cCCAguuccugucgcGGGCAUaCgCGGAGuuuuuCUCGGGGGAc -3' miRNA: 3'- -GGU-----------UCUGUAaG-GCUUCu----GAGCCCCCU- -5' |
|||||||
5545 | 5' | -52.4 | NC_001806.1 | + | 113301 | 0.69 | 0.929391 |
Target: 5'- -gGGGACGUUCCcccgGccGGCcCGGGGGAg -3' miRNA: 3'- ggUUCUGUAAGG----CuuCUGaGCCCCCU- -5' |
|||||||
5545 | 5' | -52.4 | NC_001806.1 | + | 72626 | 0.69 | 0.929391 |
Target: 5'- aCAGGGCc-UCCG-AGACauccCGGGGGAc -3' miRNA: 3'- gGUUCUGuaAGGCuUCUGa---GCCCCCU- -5' |
|||||||
5545 | 5' | -52.4 | NC_001806.1 | + | 37791 | 0.69 | 0.934536 |
Target: 5'- gCCGGGGCGcgggggUCCGcGGGCg-GGGGGGc -3' miRNA: 3'- -GGUUCUGUa-----AGGCuUCUGagCCCCCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home