miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5545 5' -52.4 NC_001806.1 + 2794 0.68 0.948514
Target:  5'- cCCGGGGCg--CCGcGGGCUgggCGGGGGc -3'
miRNA:   3'- -GGUUCUGuaaGGCuUCUGA---GCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 9929 0.68 0.948514
Target:  5'- aCCAcacacAGAUAcaggCCGGAGugUUGuGGGGAc -3'
miRNA:   3'- -GGU-----UCUGUaa--GGCUUCugAGC-CCCCU- -5'
5545 5' -52.4 NC_001806.1 + 10379 0.71 0.864717
Target:  5'- gCCAAGACc--UCGggGGggCGGGGGGa -3'
miRNA:   3'- -GGUUCUGuaaGGCuuCUgaGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 13568 0.66 0.987711
Target:  5'- uCCAAcacGGCGUaguaaaccgugaUCgGGAGGCUgGGGGGc -3'
miRNA:   3'- -GGUU---CUGUA------------AGgCUUCUGAgCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 15952 0.66 0.986115
Target:  5'- --cGGAUcc-CCGGccaGGACUCGGGGGc -3'
miRNA:   3'- gguUCUGuaaGGCU---UCUGAGCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 20892 0.66 0.988882
Target:  5'- gCCGGGACg--CCGAuacgcGGACgaagcgcgggaGGGGGAu -3'
miRNA:   3'- -GGUUCUGuaaGGCU-----UCUGag---------CCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 27244 0.68 0.960355
Target:  5'- aCAGGGCGggCCGc---CUCGGGGGc -3'
miRNA:   3'- gGUUCUGUaaGGCuucuGAGCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 29002 0.67 0.978107
Target:  5'- uCUGAGGCGgagaCCGAAGugggggggCGGGGGGa -3'
miRNA:   3'- -GGUUCUGUaa--GGCUUCuga-----GCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 29118 0.7 0.886576
Target:  5'- gCAGGGCGUggaUGggGGggcgguCUCGGGGGGg -3'
miRNA:   3'- gGUUCUGUAag-GCuuCU------GAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 30386 0.67 0.978107
Target:  5'- gCCGGGcGCGUgcgaCGGuggcgcgcGGCUCGGGGGGg -3'
miRNA:   3'- -GGUUC-UGUAag--GCUu-------CUGAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 33993 0.71 0.849064
Target:  5'- gCCGGGGCAggggCGggGGCgugggCGGGGGu -3'
miRNA:   3'- -GGUUCUGUaag-GCuuCUGa----GCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 34762 0.68 0.963845
Target:  5'- -gGGGGCAaagCCGGcgGGGCgguUCGGGGGGg -3'
miRNA:   3'- ggUUCUGUaa-GGCU--UCUG---AGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 37791 0.69 0.934536
Target:  5'- gCCGGGGCGcgggggUCCGcGGGCg-GGGGGGc -3'
miRNA:   3'- -GGUUCUGUa-----AGGCuUCUGagCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 38384 0.77 0.546259
Target:  5'- uCCAGGuCGUcgcggcggcucUCCGccGGCUCGGGGGGg -3'
miRNA:   3'- -GGUUCuGUA-----------AGGCuuCUGAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 52704 0.68 0.948943
Target:  5'- aCCcGGAgGUUCCGGAGGCgccgcgcggacggcgCGGGGc- -3'
miRNA:   3'- -GGuUCUgUAAGGCUUCUGa--------------GCCCCcu -5'
5545 5' -52.4 NC_001806.1 + 53094 0.66 0.98037
Target:  5'- aCGAGACGgugagCGAGGACg-GGGGGc -3'
miRNA:   3'- gGUUCUGUaag--GCUUCUGagCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 56664 0.66 0.986115
Target:  5'- cCCGugGGAUcgUUgGggGG-UCGGGGGGg -3'
miRNA:   3'- -GGU--UCUGuaAGgCuuCUgAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 67521 0.66 0.987711
Target:  5'- cCCugGGCcgUCgCGgcGAgagaUCGGGGGGc -3'
miRNA:   3'- -GGuuCUGuaAG-GCuuCUg---AGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 72626 0.69 0.929391
Target:  5'- aCAGGGCc-UCCG-AGACauccCGGGGGAc -3'
miRNA:   3'- gGUUCUGuaAGGCuUCUGa---GCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 72942 0.66 0.97971
Target:  5'- aCCugGACuccgccuuccagcgUCGAAGACcugacuUCGGGGGAg -3'
miRNA:   3'- -GGuuCUGuaa-----------GGCUUCUG------AGCCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.