miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5545 5' -52.4 NC_001806.1 + 151547 0.71 0.872225
Target:  5'- gCCcGGGCgg-CCGggGGCggCGGGGGc -3'
miRNA:   3'- -GGuUCUGuaaGGCuuCUGa-GCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 150627 0.71 0.872225
Target:  5'- cCCAauGGGCcgggccCCGAAGACUCGGcGGAc -3'
miRNA:   3'- -GGU--UCUGuaa---GGCUUCUGAGCCcCCU- -5'
5545 5' -52.4 NC_001806.1 + 149011 0.69 0.934536
Target:  5'- aCCcAGACA-UCCGGggcGGGCUaaGGGGAa -3'
miRNA:   3'- -GGuUCUGUaAGGCU---UCUGAgcCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 147763 0.66 0.989161
Target:  5'- cCCGAcGCgg-CCGcGGACgCGGGGGGc -3'
miRNA:   3'- -GGUUcUGuaaGGCuUCUGaGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 147278 0.72 0.832605
Target:  5'- gCgGAGGCcg-CCGAGGACgucaGGGGGGu -3'
miRNA:   3'- -GgUUCUGuaaGGCUUCUGag--CCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 146774 0.67 0.967113
Target:  5'- uCCGAcGCGggggCCGucgGGuACUCGGGGGGc -3'
miRNA:   3'- -GGUUcUGUaa--GGCu--UC-UGAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 144020 0.66 0.986115
Target:  5'- cCCAacGGAaagcggCGggGugUUGGGGGAg -3'
miRNA:   3'- -GGU--UCUguaag-GCuuCugAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 141615 1.12 0.005113
Target:  5'- gCCAAGACAUUCCGAAGACUCGGGGGAg -3'
miRNA:   3'- -GGUUCUGUAAGGCUUCUGAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 138550 0.66 0.985434
Target:  5'- uUCGAGGCAguguugcgugaCGAcagcuuuguaaAGACUCaGGGGGAg -3'
miRNA:   3'- -GGUUCUGUaag--------GCU-----------UCUGAG-CCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 129695 0.74 0.710533
Target:  5'- uCC-GGACGccucUCCGGAGGCcCGGGGGGc -3'
miRNA:   3'- -GGuUCUGUa---AGGCUUCUGaGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 126874 0.67 0.978107
Target:  5'- -gAGGACGgcgCCGggGcuCUCGGGGc- -3'
miRNA:   3'- ggUUCUGUaa-GGCuuCu-GAGCCCCcu -5'
5545 5' -52.4 NC_001806.1 + 125548 0.67 0.978107
Target:  5'- cCCcAGACAUUCCGcuauCUCcuGGGGGc -3'
miRNA:   3'- -GGuUCUGUAAGGCuucuGAG--CCCCCu -5'
5545 5' -52.4 NC_001806.1 + 124086 0.74 0.720597
Target:  5'- cCCGGGGC---CCGAAGcUUCGGGGGGu -3'
miRNA:   3'- -GGUUCUGuaaGGCUUCuGAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 118582 0.71 0.879513
Target:  5'- cCCAcGcCcUUcCCGcGGACUCGGGGGAc -3'
miRNA:   3'- -GGUuCuGuAA-GGCuUCUGAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 117958 0.66 0.985434
Target:  5'- cCCGAcGACAgcgacgccggucCCGGAGGCUCGGGu-- -3'
miRNA:   3'- -GGUU-CUGUaa----------GGCUUCUGAGCCCccu -5'
5545 5' -52.4 NC_001806.1 + 117423 0.68 0.950214
Target:  5'- uCCGAGGCGccguuccguuUUCCgGAauacguacggacgucAGugUUGGGGGAg -3'
miRNA:   3'- -GGUUCUGU----------AAGG-CU---------------UCugAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 115233 0.72 0.824092
Target:  5'- cCgGGGACGcgccgCCGggGGCguuuacgCGGGGGAc -3'
miRNA:   3'- -GgUUCUGUaa---GGCuuCUGa------GCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 113381 0.67 0.967113
Target:  5'- uCCGGcGGCGUUCCG-GGACgccCGGGGc- -3'
miRNA:   3'- -GGUU-CUGUAAGGCuUCUGa--GCCCCcu -5'
5545 5' -52.4 NC_001806.1 + 113301 0.69 0.929391
Target:  5'- -gGGGACGUUCCcccgGccGGCcCGGGGGAg -3'
miRNA:   3'- ggUUCUGUAAGG----CuuCUGaGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 106830 0.7 0.906368
Target:  5'- cCCAguuccugucgcGGGCAUaCgCGGAGuuuuuCUCGGGGGAc -3'
miRNA:   3'- -GGU-----------UCUGUAaG-GCUUCu----GAGCCCCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.