miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5545 5' -52.4 NC_001806.1 + 103734 0.67 0.978107
Target:  5'- ---uGGCGggCCGcuGACUCGGGcGGGu -3'
miRNA:   3'- gguuCUGUaaGGCuuCUGAGCCC-CCU- -5'
5545 5' -52.4 NC_001806.1 + 103238 0.66 0.987711
Target:  5'- uCCAAaa-GUcCCGggGgaACUCGGGGGu -3'
miRNA:   3'- -GGUUcugUAaGGCuuC--UGAGCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 95436 0.67 0.975657
Target:  5'- cCCGggGGGCAggggCCcGAGACgUGGGGGGa -3'
miRNA:   3'- -GGU--UCUGUaa--GGcUUCUGaGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 93273 0.71 0.879513
Target:  5'- uCCGGGGCAUuaucUCCGAGGGCg-GGGcGGc -3'
miRNA:   3'- -GGUUCUGUA----AGGCUUCUGagCCC-CCu -5'
5545 5' -52.4 NC_001806.1 + 91198 0.68 0.951877
Target:  5'- gUCGGGGCGUaccuggcgcgcgCCGcGGGACUCGuGGGGGc -3'
miRNA:   3'- -GGUUCUGUAa-----------GGC-UUCUGAGC-CCCCU- -5'
5545 5' -52.4 NC_001806.1 + 84423 0.7 0.900007
Target:  5'- cCCGAGACGcagcCCGggGA--CGGGGGc -3'
miRNA:   3'- -GGUUCUGUaa--GGCuuCUgaGCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 77126 0.75 0.69021
Target:  5'- gCCGAG-CGggCCGggGccguggaggaGCUCGGGGGGc -3'
miRNA:   3'- -GGUUCuGUaaGGCuuC----------UGAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 76120 0.8 0.413088
Target:  5'- aCGAGGCcgUCCuacaccugucgGAAGACUUGGGGGGc -3'
miRNA:   3'- gGUUCUGuaAGG-----------CUUCUGAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 72942 0.66 0.97971
Target:  5'- aCCugGACuccgccuuccagcgUCGAAGACcugacuUCGGGGGAg -3'
miRNA:   3'- -GGuuCUGuaa-----------GGCUUCUG------AGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 72626 0.69 0.929391
Target:  5'- aCAGGGCc-UCCG-AGACauccCGGGGGAc -3'
miRNA:   3'- gGUUCUGuaAGGCuUCUGa---GCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 67521 0.66 0.987711
Target:  5'- cCCugGGCcgUCgCGgcGAgagaUCGGGGGGc -3'
miRNA:   3'- -GGuuCUGuaAG-GCuuCUg---AGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 56664 0.66 0.986115
Target:  5'- cCCGugGGAUcgUUgGggGG-UCGGGGGGg -3'
miRNA:   3'- -GGU--UCUGuaAGgCuuCUgAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 53094 0.66 0.98037
Target:  5'- aCGAGACGgugagCGAGGACg-GGGGGc -3'
miRNA:   3'- gGUUCUGUaag--GCUUCUGagCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 52704 0.68 0.948943
Target:  5'- aCCcGGAgGUUCCGGAGGCgccgcgcggacggcgCGGGGc- -3'
miRNA:   3'- -GGuUCUgUAAGGCUUCUGa--------------GCCCCcu -5'
5545 5' -52.4 NC_001806.1 + 38384 0.77 0.546259
Target:  5'- uCCAGGuCGUcgcggcggcucUCCGccGGCUCGGGGGGg -3'
miRNA:   3'- -GGUUCuGUA-----------AGGCuuCUGAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 37791 0.69 0.934536
Target:  5'- gCCGGGGCGcgggggUCCGcGGGCg-GGGGGGc -3'
miRNA:   3'- -GGUUCUGUa-----AGGCuUCUGagCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 34762 0.68 0.963845
Target:  5'- -gGGGGCAaagCCGGcgGGGCgguUCGGGGGGg -3'
miRNA:   3'- ggUUCUGUaa-GGCU--UCUG---AGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 33993 0.71 0.849064
Target:  5'- gCCGGGGCAggggCGggGGCgugggCGGGGGu -3'
miRNA:   3'- -GGUUCUGUaag-GCuuCUGa----GCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 30386 0.67 0.978107
Target:  5'- gCCGGGcGCGUgcgaCGGuggcgcgcGGCUCGGGGGGg -3'
miRNA:   3'- -GGUUC-UGUAag--GCUu-------CUGAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 29118 0.7 0.886576
Target:  5'- gCAGGGCGUggaUGggGGggcgguCUCGGGGGGg -3'
miRNA:   3'- gGUUCUGUAag-GCuuCU------GAGCCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.