miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5545 5' -52.4 NC_001806.1 + 76120 0.8 0.413088
Target:  5'- aCGAGGCcgUCCuacaccugucgGAAGACUUGGGGGGc -3'
miRNA:   3'- gGUUCUGuaAGG-----------CUUCUGAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 77126 0.75 0.69021
Target:  5'- gCCGAG-CGggCCGggGccguggaggaGCUCGGGGGGc -3'
miRNA:   3'- -GGUUCuGUaaGGCuuC----------UGAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 84423 0.7 0.900007
Target:  5'- cCCGAGACGcagcCCGggGA--CGGGGGc -3'
miRNA:   3'- -GGUUCUGUaa--GGCuuCUgaGCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 91198 0.68 0.951877
Target:  5'- gUCGGGGCGUaccuggcgcgcgCCGcGGGACUCGuGGGGGc -3'
miRNA:   3'- -GGUUCUGUAa-----------GGC-UUCUGAGC-CCCCU- -5'
5545 5' -52.4 NC_001806.1 + 93273 0.71 0.879513
Target:  5'- uCCGGGGCAUuaucUCCGAGGGCg-GGGcGGc -3'
miRNA:   3'- -GGUUCUGUA----AGGCUUCUGagCCC-CCu -5'
5545 5' -52.4 NC_001806.1 + 95436 0.67 0.975657
Target:  5'- cCCGggGGGCAggggCCcGAGACgUGGGGGGa -3'
miRNA:   3'- -GGU--UCUGUaa--GGcUUCUGaGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 103238 0.66 0.987711
Target:  5'- uCCAAaa-GUcCCGggGgaACUCGGGGGu -3'
miRNA:   3'- -GGUUcugUAaGGCuuC--UGAGCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 103734 0.67 0.978107
Target:  5'- ---uGGCGggCCGcuGACUCGGGcGGGu -3'
miRNA:   3'- gguuCUGUaaGGCuuCUGAGCCC-CCU- -5'
5545 5' -52.4 NC_001806.1 + 106830 0.7 0.906368
Target:  5'- cCCAguuccugucgcGGGCAUaCgCGGAGuuuuuCUCGGGGGAc -3'
miRNA:   3'- -GGU-----------UCUGUAaG-GCUUCu----GAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 113301 0.69 0.929391
Target:  5'- -gGGGACGUUCCcccgGccGGCcCGGGGGAg -3'
miRNA:   3'- ggUUCUGUAAGG----CuuCUGaGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 113381 0.67 0.967113
Target:  5'- uCCGGcGGCGUUCCG-GGACgccCGGGGc- -3'
miRNA:   3'- -GGUU-CUGUAAGGCuUCUGa--GCCCCcu -5'
5545 5' -52.4 NC_001806.1 + 115233 0.72 0.824092
Target:  5'- cCgGGGACGcgccgCCGggGGCguuuacgCGGGGGAc -3'
miRNA:   3'- -GgUUCUGUaa---GGCuuCUGa------GCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 117423 0.68 0.950214
Target:  5'- uCCGAGGCGccguuccguuUUCCgGAauacguacggacgucAGugUUGGGGGAg -3'
miRNA:   3'- -GGUUCUGU----------AAGG-CU---------------UCugAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 117958 0.66 0.985434
Target:  5'- cCCGAcGACAgcgacgccggucCCGGAGGCUCGGGu-- -3'
miRNA:   3'- -GGUU-CUGUaa----------GGCUUCUGAGCCCccu -5'
5545 5' -52.4 NC_001806.1 + 118582 0.71 0.879513
Target:  5'- cCCAcGcCcUUcCCGcGGACUCGGGGGAc -3'
miRNA:   3'- -GGUuCuGuAA-GGCuUCUGAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 124086 0.74 0.720597
Target:  5'- cCCGGGGC---CCGAAGcUUCGGGGGGu -3'
miRNA:   3'- -GGUUCUGuaaGGCUUCuGAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 125548 0.67 0.978107
Target:  5'- cCCcAGACAUUCCGcuauCUCcuGGGGGc -3'
miRNA:   3'- -GGuUCUGUAAGGCuucuGAG--CCCCCu -5'
5545 5' -52.4 NC_001806.1 + 126874 0.67 0.978107
Target:  5'- -gAGGACGgcgCCGggGcuCUCGGGGc- -3'
miRNA:   3'- ggUUCUGUaa-GGCuuCu-GAGCCCCcu -5'
5545 5' -52.4 NC_001806.1 + 129695 0.74 0.710533
Target:  5'- uCC-GGACGccucUCCGGAGGCcCGGGGGGc -3'
miRNA:   3'- -GGuUCUGUa---AGGCUUCUGaGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 138550 0.66 0.985434
Target:  5'- uUCGAGGCAguguugcgugaCGAcagcuuuguaaAGACUCaGGGGGAg -3'
miRNA:   3'- -GGUUCUGUaag--------GCU-----------UCUGAG-CCCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.