Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5545 | 5' | -52.4 | NC_001806.1 | + | 141615 | 1.12 | 0.005113 |
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Target: 5'- gCCAAGACAUUCCGAAGACUCGGGGGAg -3' miRNA: 3'- -GGUUCUGUAAGGCUUCUGAGCCCCCU- -5' |
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| 5545 | 5' | -52.4 | NC_001806.1 | + | 144020 | 0.66 | 0.986115 |
|
Target: 5'- cCCAacGGAaagcggCGggGugUUGGGGGAg -3' miRNA: 3'- -GGU--UCUguaag-GCuuCugAGCCCCCU- -5' |
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| 5545 | 5' | -52.4 | NC_001806.1 | + | 146774 | 0.67 | 0.967113 |
|
Target: 5'- uCCGAcGCGggggCCGucgGGuACUCGGGGGGc -3' miRNA: 3'- -GGUUcUGUaa--GGCu--UC-UGAGCCCCCU- -5' |
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| 5545 | 5' | -52.4 | NC_001806.1 | + | 147278 | 0.72 | 0.832605 |
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Target: 5'- gCgGAGGCcg-CCGAGGACgucaGGGGGGu -3' miRNA: 3'- -GgUUCUGuaaGGCUUCUGag--CCCCCU- -5' |
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| 5545 | 5' | -52.4 | NC_001806.1 | + | 147763 | 0.66 | 0.989161 |
|
Target: 5'- cCCGAcGCgg-CCGcGGACgCGGGGGGc -3' miRNA: 3'- -GGUUcUGuaaGGCuUCUGaGCCCCCU- -5' |
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| 5545 | 5' | -52.4 | NC_001806.1 | + | 149011 | 0.69 | 0.934536 |
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Target: 5'- aCCcAGACA-UCCGGggcGGGCUaaGGGGAa -3' miRNA: 3'- -GGuUCUGUaAGGCU---UCUGAgcCCCCU- -5' |
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| 5545 | 5' | -52.4 | NC_001806.1 | + | 150627 | 0.71 | 0.872225 |
|
Target: 5'- cCCAauGGGCcgggccCCGAAGACUCGGcGGAc -3' miRNA: 3'- -GGU--UCUGuaa---GGCUUCUGAGCCcCCU- -5' |
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| 5545 | 5' | -52.4 | NC_001806.1 | + | 151547 | 0.71 | 0.872225 |
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Target: 5'- gCCcGGGCgg-CCGggGGCggCGGGGGc -3' miRNA: 3'- -GGuUCUGuaaGGCuuCUGa-GCCCCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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