Results 41 - 48 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5545 | 5' | -52.4 | NC_001806.1 | + | 106830 | 0.7 | 0.906368 |
|
Target: 5'- cCCAguuccugucgcGGGCAUaCgCGGAGuuuuuCUCGGGGGAc -3' miRNA: 3'- -GGU-----------UCUGUAaG-GCUUCu----GAGCCCCCU- -5' |
|||||||
| 5545 | 5' | -52.4 | NC_001806.1 | + | 113301 | 0.69 | 0.929391 |
|
Target: 5'- -gGGGACGUUCCcccgGccGGCcCGGGGGAg -3' miRNA: 3'- ggUUCUGUAAGG----CuuCUGaGCCCCCU- -5' |
|||||||
| 5545 | 5' | -52.4 | NC_001806.1 | + | 72626 | 0.69 | 0.929391 |
|
Target: 5'- aCAGGGCc-UCCG-AGACauccCGGGGGAc -3' miRNA: 3'- gGUUCUGuaAGGCuUCUGa---GCCCCCU- -5' |
|||||||
| 5545 | 5' | -52.4 | NC_001806.1 | + | 37791 | 0.69 | 0.934536 |
|
Target: 5'- gCCGGGGCGcgggggUCCGcGGGCg-GGGGGGc -3' miRNA: 3'- -GGUUCUGUa-----AGGCuUCUGagCCCCCU- -5' |
|||||||
| 5545 | 5' | -52.4 | NC_001806.1 | + | 149011 | 0.69 | 0.934536 |
|
Target: 5'- aCCcAGACA-UCCGGggcGGGCUaaGGGGAa -3' miRNA: 3'- -GGuUCUGUaAGGCU---UCUGAgcCCCCU- -5' |
|||||||
| 5545 | 5' | -52.4 | NC_001806.1 | + | 9929 | 0.68 | 0.948514 |
|
Target: 5'- aCCAcacacAGAUAcaggCCGGAGugUUGuGGGGAc -3' miRNA: 3'- -GGU-----UCUGUaa--GGCUUCugAGC-CCCCU- -5' |
|||||||
| 5545 | 5' | -52.4 | NC_001806.1 | + | 2794 | 0.68 | 0.948514 |
|
Target: 5'- cCCGGGGCg--CCGcGGGCUgggCGGGGGc -3' miRNA: 3'- -GGUUCUGuaaGGCuUCUGA---GCCCCCu -5' |
|||||||
| 5545 | 5' | -52.4 | NC_001806.1 | + | 52704 | 0.68 | 0.948943 |
|
Target: 5'- aCCcGGAgGUUCCGGAGGCgccgcgcggacggcgCGGGGc- -3' miRNA: 3'- -GGuUCUgUAAGGCUUCUGa--------------GCCCCcu -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home