Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5545 | 5' | -52.4 | NC_001806.1 | + | 37791 | 0.69 | 0.934536 |
Target: 5'- gCCGGGGCGcgggggUCCGcGGGCg-GGGGGGc -3' miRNA: 3'- -GGUUCUGUa-----AGGCuUCUGagCCCCCU- -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 72626 | 0.69 | 0.929391 |
Target: 5'- aCAGGGCc-UCCG-AGACauccCGGGGGAc -3' miRNA: 3'- gGUUCUGuaAGGCuUCUGa---GCCCCCU- -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 113301 | 0.69 | 0.929391 |
Target: 5'- -gGGGACGUUCCcccgGccGGCcCGGGGGAg -3' miRNA: 3'- ggUUCUGUAAGG----CuuCUGaGCCCCCU- -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 106830 | 0.7 | 0.906368 |
Target: 5'- cCCAguuccugucgcGGGCAUaCgCGGAGuuuuuCUCGGGGGAc -3' miRNA: 3'- -GGU-----------UCUGUAaG-GCUUCu----GAGCCCCCU- -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 84423 | 0.7 | 0.900007 |
Target: 5'- cCCGAGACGcagcCCGggGA--CGGGGGc -3' miRNA: 3'- -GGUUCUGUaa--GGCuuCUgaGCCCCCu -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 29118 | 0.7 | 0.886576 |
Target: 5'- gCAGGGCGUggaUGggGGggcgguCUCGGGGGGg -3' miRNA: 3'- gGUUCUGUAag-GCuuCU------GAGCCCCCU- -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 118582 | 0.71 | 0.879513 |
Target: 5'- cCCAcGcCcUUcCCGcGGACUCGGGGGAc -3' miRNA: 3'- -GGUuCuGuAA-GGCuUCUGAGCCCCCU- -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 141615 | 1.12 | 0.005113 |
Target: 5'- gCCAAGACAUUCCGAAGACUCGGGGGAg -3' miRNA: 3'- -GGUUCUGUAAGGCUUCUGAGCCCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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