miRNA display CGI


Results 41 - 48 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5545 5' -52.4 NC_001806.1 + 15952 0.66 0.986115
Target:  5'- --cGGAUcc-CCGGccaGGACUCGGGGGc -3'
miRNA:   3'- gguUCUGuaaGGCU---UCUGAGCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 56664 0.66 0.986115
Target:  5'- cCCGugGGAUcgUUgGggGG-UCGGGGGGg -3'
miRNA:   3'- -GGU--UCUGuaAGgCuuCUgAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 144020 0.66 0.986115
Target:  5'- cCCAacGGAaagcggCGggGugUUGGGGGAg -3'
miRNA:   3'- -GGU--UCUguaag-GCuuCugAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 13568 0.66 0.987711
Target:  5'- uCCAAcacGGCGUaguaaaccgugaUCgGGAGGCUgGGGGGc -3'
miRNA:   3'- -GGUU---CUGUA------------AGgCUUCUGAgCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 67521 0.66 0.987711
Target:  5'- cCCugGGCcgUCgCGgcGAgagaUCGGGGGGc -3'
miRNA:   3'- -GGuuCUGuaAG-GCuuCUg---AGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 103238 0.66 0.987711
Target:  5'- uCCAAaa-GUcCCGggGgaACUCGGGGGu -3'
miRNA:   3'- -GGUUcugUAaGGCuuC--UGAGCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 20892 0.66 0.988882
Target:  5'- gCCGGGACg--CCGAuacgcGGACgaagcgcgggaGGGGGAu -3'
miRNA:   3'- -GGUUCUGuaaGGCU-----UCUGag---------CCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 147763 0.66 0.989161
Target:  5'- cCCGAcGCgg-CCGcGGACgCGGGGGGc -3'
miRNA:   3'- -GGUUcUGuaaGGCuUCUGaGCCCCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.