miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5545 5' -52.4 NC_001806.1 + 126874 0.67 0.978107
Target:  5'- -gAGGACGgcgCCGggGcuCUCGGGGc- -3'
miRNA:   3'- ggUUCUGUaa-GGCuuCu-GAGCCCCcu -5'
5545 5' -52.4 NC_001806.1 + 53094 0.66 0.98037
Target:  5'- aCGAGACGgugagCGAGGACg-GGGGGc -3'
miRNA:   3'- gGUUCUGUaag--GCUUCUGagCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 117958 0.66 0.985434
Target:  5'- cCCGAcGACAgcgacgccggucCCGGAGGCUCGGGu-- -3'
miRNA:   3'- -GGUU-CUGUaa----------GGCUUCUGAGCCCccu -5'
5545 5' -52.4 NC_001806.1 + 13568 0.66 0.987711
Target:  5'- uCCAAcacGGCGUaguaaaccgugaUCgGGAGGCUgGGGGGc -3'
miRNA:   3'- -GGUU---CUGUA------------AGgCUUCUGAgCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 67521 0.66 0.987711
Target:  5'- cCCugGGCcgUCgCGgcGAgagaUCGGGGGGc -3'
miRNA:   3'- -GGuuCUGuaAG-GCuuCUg---AGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 103238 0.66 0.987711
Target:  5'- uCCAAaa-GUcCCGggGgaACUCGGGGGu -3'
miRNA:   3'- -GGUUcugUAaGGCuuC--UGAGCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 20892 0.66 0.988882
Target:  5'- gCCGGGACg--CCGAuacgcGGACgaagcgcgggaGGGGGAu -3'
miRNA:   3'- -GGUUCUGuaaGGCU-----UCUGag---------CCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 147763 0.66 0.989161
Target:  5'- cCCGAcGCgg-CCGcGGACgCGGGGGGc -3'
miRNA:   3'- -GGUUcUGuaaGGCuUCUGaGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 144020 0.66 0.986115
Target:  5'- cCCAacGGAaagcggCGggGugUUGGGGGAg -3'
miRNA:   3'- -GGU--UCUguaag-GCuuCugAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 125548 0.67 0.978107
Target:  5'- cCCcAGACAUUCCGcuauCUCcuGGGGGc -3'
miRNA:   3'- -GGuUCUGUAAGGCuucuGAG--CCCCCu -5'
5545 5' -52.4 NC_001806.1 + 72942 0.66 0.97971
Target:  5'- aCCugGACuccgccuuccagcgUCGAAGACcugacuUCGGGGGAg -3'
miRNA:   3'- -GGuuCUGuaa-----------GGCUUCUG------AGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 30386 0.67 0.978107
Target:  5'- gCCGGGcGCGUgcgaCGGuggcgcgcGGCUCGGGGGGg -3'
miRNA:   3'- -GGUUC-UGUAag--GCUu-------CUGAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 29002 0.67 0.978107
Target:  5'- uCUGAGGCGgagaCCGAAGugggggggCGGGGGGa -3'
miRNA:   3'- -GGUUCUGUaa--GGCUUCuga-----GCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 103734 0.67 0.978107
Target:  5'- ---uGGCGggCCGcuGACUCGGGcGGGu -3'
miRNA:   3'- gguuCUGUaaGGCuuCUGAGCCC-CCU- -5'
5545 5' -52.4 NC_001806.1 + 95436 0.67 0.975657
Target:  5'- cCCGggGGGCAggggCCcGAGACgUGGGGGGa -3'
miRNA:   3'- -GGU--UCUGUaa--GGcUUCUGaGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 146774 0.67 0.967113
Target:  5'- uCCGAcGCGggggCCGucgGGuACUCGGGGGGc -3'
miRNA:   3'- -GGUUcUGUaa--GGCu--UC-UGAGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 113381 0.67 0.967113
Target:  5'- uCCGGcGGCGUUCCG-GGACgccCGGGGc- -3'
miRNA:   3'- -GGUU-CUGUAAGGCuUCUGa--GCCCCcu -5'
5545 5' -52.4 NC_001806.1 + 34762 0.68 0.963845
Target:  5'- -gGGGGCAaagCCGGcgGGGCgguUCGGGGGGg -3'
miRNA:   3'- ggUUCUGUaa-GGCU--UCUG---AGCCCCCU- -5'
5545 5' -52.4 NC_001806.1 + 27244 0.68 0.960355
Target:  5'- aCAGGGCGggCCGc---CUCGGGGGc -3'
miRNA:   3'- gGUUCUGUaaGGCuucuGAGCCCCCu -5'
5545 5' -52.4 NC_001806.1 + 91198 0.68 0.951877
Target:  5'- gUCGGGGCGUaccuggcgcgcgCCGcGGGACUCGuGGGGGc -3'
miRNA:   3'- -GGUUCUGUAa-----------GGC-UUCUGAGC-CCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.