Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5545 | 5' | -52.4 | NC_001806.1 | + | 34762 | 0.68 | 0.963845 |
Target: 5'- -gGGGGCAaagCCGGcgGGGCgguUCGGGGGGg -3' miRNA: 3'- ggUUCUGUaa-GGCU--UCUG---AGCCCCCU- -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 27244 | 0.68 | 0.960355 |
Target: 5'- aCAGGGCGggCCGc---CUCGGGGGc -3' miRNA: 3'- gGUUCUGUaaGGCuucuGAGCCCCCu -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 91198 | 0.68 | 0.951877 |
Target: 5'- gUCGGGGCGUaccuggcgcgcgCCGcGGGACUCGuGGGGGc -3' miRNA: 3'- -GGUUCUGUAa-----------GGC-UUCUGAGC-CCCCU- -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 117423 | 0.68 | 0.950214 |
Target: 5'- uCCGAGGCGccguuccguuUUCCgGAauacguacggacgucAGugUUGGGGGAg -3' miRNA: 3'- -GGUUCUGU----------AAGG-CU---------------UCugAGCCCCCU- -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 52704 | 0.68 | 0.948943 |
Target: 5'- aCCcGGAgGUUCCGGAGGCgccgcgcggacggcgCGGGGc- -3' miRNA: 3'- -GGuUCUgUAAGGCUUCUGa--------------GCCCCcu -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 2794 | 0.68 | 0.948514 |
Target: 5'- cCCGGGGCg--CCGcGGGCUgggCGGGGGc -3' miRNA: 3'- -GGUUCUGuaaGGCuUCUGA---GCCCCCu -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 9929 | 0.68 | 0.948514 |
Target: 5'- aCCAcacacAGAUAcaggCCGGAGugUUGuGGGGAc -3' miRNA: 3'- -GGU-----UCUGUaa--GGCUUCugAGC-CCCCU- -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 149011 | 0.69 | 0.934536 |
Target: 5'- aCCcAGACA-UCCGGggcGGGCUaaGGGGAa -3' miRNA: 3'- -GGuUCUGUaAGGCU---UCUGAgcCCCCU- -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 37791 | 0.69 | 0.934536 |
Target: 5'- gCCGGGGCGcgggggUCCGcGGGCg-GGGGGGc -3' miRNA: 3'- -GGUUCUGUa-----AGGCuUCUGagCCCCCU- -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 72626 | 0.69 | 0.929391 |
Target: 5'- aCAGGGCc-UCCG-AGACauccCGGGGGAc -3' miRNA: 3'- gGUUCUGuaAGGCuUCUGa---GCCCCCU- -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 113301 | 0.69 | 0.929391 |
Target: 5'- -gGGGACGUUCCcccgGccGGCcCGGGGGAg -3' miRNA: 3'- ggUUCUGUAAGG----CuuCUGaGCCCCCU- -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 106830 | 0.7 | 0.906368 |
Target: 5'- cCCAguuccugucgcGGGCAUaCgCGGAGuuuuuCUCGGGGGAc -3' miRNA: 3'- -GGU-----------UCUGUAaG-GCUUCu----GAGCCCCCU- -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 84423 | 0.7 | 0.900007 |
Target: 5'- cCCGAGACGcagcCCGggGA--CGGGGGc -3' miRNA: 3'- -GGUUCUGUaa--GGCuuCUgaGCCCCCu -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 29118 | 0.7 | 0.886576 |
Target: 5'- gCAGGGCGUggaUGggGGggcgguCUCGGGGGGg -3' miRNA: 3'- gGUUCUGUAag-GCuuCU------GAGCCCCCU- -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 93273 | 0.71 | 0.879513 |
Target: 5'- uCCGGGGCAUuaucUCCGAGGGCg-GGGcGGc -3' miRNA: 3'- -GGUUCUGUA----AGGCUUCUGagCCC-CCu -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 118582 | 0.71 | 0.879513 |
Target: 5'- cCCAcGcCcUUcCCGcGGACUCGGGGGAc -3' miRNA: 3'- -GGUuCuGuAA-GGCuUCUGAGCCCCCU- -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 151547 | 0.71 | 0.872225 |
Target: 5'- gCCcGGGCgg-CCGggGGCggCGGGGGc -3' miRNA: 3'- -GGuUCUGuaaGGCuuCUGa-GCCCCCu -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 150627 | 0.71 | 0.872225 |
Target: 5'- cCCAauGGGCcgggccCCGAAGACUCGGcGGAc -3' miRNA: 3'- -GGU--UCUGuaa---GGCUUCUGAGCCcCCU- -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 10379 | 0.71 | 0.864717 |
Target: 5'- gCCAAGACc--UCGggGGggCGGGGGGa -3' miRNA: 3'- -GGUUCUGuaaGGCuuCUgaGCCCCCU- -5' |
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5545 | 5' | -52.4 | NC_001806.1 | + | 33993 | 0.71 | 0.849064 |
Target: 5'- gCCGGGGCAggggCGggGGCgugggCGGGGGu -3' miRNA: 3'- -GGUUCUGUaag-GCuuCUGa----GCCCCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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