Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5546 | 5' | -60 | NC_001806.1 | + | 133414 | 0.67 | 0.678136 |
Target: 5'- gGgCCCGCGUacaccacGGCGGcaGGGGUCGUa -3' miRNA: 3'- -CgGGGCGCGaa-----CUGCCagUCCCAGCA- -5' |
|||||||
5546 | 5' | -60 | NC_001806.1 | + | 139805 | 0.67 | 0.687935 |
Target: 5'- gGCaCCCGCGCgaucAUGGUaCGGGGcCGg -3' miRNA: 3'- -CG-GGGCGCGaac-UGCCA-GUCCCaGCa -5' |
|||||||
5546 | 5' | -60 | NC_001806.1 | + | 141500 | 1.09 | 0.001286 |
Target: 5'- cGCCCCGCGCUUGACGGUCAGGGUCGUg -3' miRNA: 3'- -CGGGGCGCGAACUGCCAGUCCCAGCA- -5' |
|||||||
5546 | 5' | -60 | NC_001806.1 | + | 144348 | 0.67 | 0.717041 |
Target: 5'- cGCCCCGCGC----CGGUCcauuaAGGGcgcgCGUg -3' miRNA: 3'- -CGGGGCGCGaacuGCCAG-----UCCCa---GCA- -5' |
|||||||
5546 | 5' | -60 | NC_001806.1 | + | 147229 | 0.67 | 0.678136 |
Target: 5'- gGCCCC-CGC--GGgGGUCGGGGcCGa -3' miRNA: 3'- -CGGGGcGCGaaCUgCCAGUCCCaGCa -5' |
|||||||
5546 | 5' | -60 | NC_001806.1 | + | 149793 | 0.66 | 0.764081 |
Target: 5'- aCCUCGCGCUgggGGCGGcccUCAGGccggCGg -3' miRNA: 3'- cGGGGCGCGAa--CUGCC---AGUCCca--GCa -5' |
|||||||
5546 | 5' | -60 | NC_001806.1 | + | 151063 | 0.7 | 0.512011 |
Target: 5'- cGCaCCCGCGC--GGgGGUCgcgGGGGUCGc -3' miRNA: 3'- -CG-GGGCGCGaaCUgCCAG---UCCCAGCa -5' |
|||||||
5546 | 5' | -60 | NC_001806.1 | + | 151251 | 0.7 | 0.511069 |
Target: 5'- aGCCCCGCcccccgggcccacGCcgGGCGGUgGGGGcCGg -3' miRNA: 3'- -CGGGGCG-------------CGaaCUGCCAgUCCCaGCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home