miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5548 3' -56.2 NC_001806.1 + 150703 0.68 0.79266
Target:  5'- aGUCCcGCCCC-CGAGGCggcc--CGCc -3'
miRNA:   3'- -CAGGuCGGGGuGCUCCGaucuuaGCG- -5'
5548 3' -56.2 NC_001806.1 + 149833 0.68 0.818376
Target:  5'- cUCCggggcggGGCUCCAUGGgggucguaugcGGCUGGAggGUCGCg -3'
miRNA:   3'- cAGG-------UCGGGGUGCU-----------CCGAUCU--UAGCG- -5'
5548 3' -56.2 NC_001806.1 + 148898 0.69 0.735829
Target:  5'- uGUCC-GCCUCG-GAGGC-GGAGUCGUc -3'
miRNA:   3'- -CAGGuCGGGGUgCUCCGaUCUUAGCG- -5'
5548 3' -56.2 NC_001806.1 + 147671 0.67 0.827768
Target:  5'- -gCCGGCUCCGCcccgGGGGCcGGGG-CGCg -3'
miRNA:   3'- caGGUCGGGGUG----CUCCGaUCUUaGCG- -5'
5548 3' -56.2 NC_001806.1 + 147170 0.66 0.902131
Target:  5'- --aCGGCCCCGCccgagGAGGCggaagcggAGGAggaCGCg -3'
miRNA:   3'- cagGUCGGGGUG-----CUCCGa-------UCUUa--GCG- -5'
5548 3' -56.2 NC_001806.1 + 141907 0.7 0.706067
Target:  5'- gGUCCAGUCCa--GAGGCgccgAG-GUCGCc -3'
miRNA:   3'- -CAGGUCGGGgugCUCCGa---UCuUAGCG- -5'
5548 3' -56.2 NC_001806.1 + 141066 1.12 0.001568
Target:  5'- cGUCCAGCCCCACGAGGCUAGAAUCGCa -3'
miRNA:   3'- -CAGGUCGGGGUGCUCCGAUCUUAGCG- -5'
5548 3' -56.2 NC_001806.1 + 138541 0.67 0.844284
Target:  5'- uUCCGGgCCUuCGAGGC-AGuGUUGCg -3'
miRNA:   3'- cAGGUCgGGGuGCUCCGaUCuUAGCG- -5'
5548 3' -56.2 NC_001806.1 + 135890 0.72 0.563472
Target:  5'- -cCCGGCCUCGuCGAGGUaGGAA-CGCa -3'
miRNA:   3'- caGGUCGGGGU-GCUCCGaUCUUaGCG- -5'
5548 3' -56.2 NC_001806.1 + 135062 0.71 0.655329
Target:  5'- -aCCGGCCCCGCGgggacgcgccGGGCcGGAAaucggCGCc -3'
miRNA:   3'- caGGUCGGGGUGC----------UCCGaUCUUa----GCG- -5'
5548 3' -56.2 NC_001806.1 + 133695 0.66 0.888991
Target:  5'- uGUCU-GUCCCG-GAGGCggGGAGUCGg -3'
miRNA:   3'- -CAGGuCGGGGUgCUCCGa-UCUUAGCg -5'
5548 3' -56.2 NC_001806.1 + 128858 0.66 0.877825
Target:  5'- cGUCCGcGCCCCggucaugccuuucguGgGGGGCgcGGAGUCGg -3'
miRNA:   3'- -CAGGU-CGGGG---------------UgCUCCGa-UCUUAGCg -5'
5548 3' -56.2 NC_001806.1 + 125880 0.67 0.852255
Target:  5'- -cCCGGCCCCucaugggguuuuACGAGGCggcca-CGCa -3'
miRNA:   3'- caGGUCGGGG------------UGCUCCGaucuuaGCG- -5'
5548 3' -56.2 NC_001806.1 + 123833 0.72 0.604117
Target:  5'- aUCCGGCCuCCGCGAgcGGCU----UCGCg -3'
miRNA:   3'- cAGGUCGG-GGUGCU--CCGAucuuAGCG- -5'
5548 3' -56.2 NC_001806.1 + 123744 0.69 0.764776
Target:  5'- cUCCAaCCCCACGGGGCcuccGGG-CGCc -3'
miRNA:   3'- cAGGUcGGGGUGCUCCGau--CUUaGCG- -5'
5548 3' -56.2 NC_001806.1 + 122196 0.72 0.573577
Target:  5'- -aCCAGCCCCGC-AGGCaGGcGUCGa -3'
miRNA:   3'- caGGUCGGGGUGcUCCGaUCuUAGCg -5'
5548 3' -56.2 NC_001806.1 + 119280 0.7 0.675741
Target:  5'- -cCCGGCCCCACGcggGGGCgcccgcAGAccCGCc -3'
miRNA:   3'- caGGUCGGGGUGC---UCCGa-----UCUuaGCG- -5'
5548 3' -56.2 NC_001806.1 + 118956 0.68 0.819239
Target:  5'- cGUCCAGCgCCGgGGGGUUGu--UCGUc -3'
miRNA:   3'- -CAGGUCGgGGUgCUCCGAUcuuAGCG- -5'
5548 3' -56.2 NC_001806.1 + 117369 0.68 0.79266
Target:  5'- gGUCCGGCCugggCCGCGAGG-UAG-AUgGCc -3'
miRNA:   3'- -CAGGUCGG----GGUGCUCCgAUCuUAgCG- -5'
5548 3' -56.2 NC_001806.1 + 108533 0.67 0.867592
Target:  5'- -cCCGGCggCCCGCGugcGGCUGGccgCGCc -3'
miRNA:   3'- caGGUCG--GGGUGCu--CCGAUCuuaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.