Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5548 | 3' | -56.2 | NC_001806.1 | + | 57138 | 0.66 | 0.908352 |
Target: 5'- aUCCgcgcggugGGCCgCGCGAGGggAGGGggugCGCg -3' miRNA: 3'- cAGG--------UCGGgGUGCUCCgaUCUUa---GCG- -5' |
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5548 | 3' | -56.2 | NC_001806.1 | + | 119280 | 0.7 | 0.675741 |
Target: 5'- -cCCGGCCCCACGcggGGGCgcccgcAGAccCGCc -3' miRNA: 3'- caGGUCGGGGUGC---UCCGa-----UCUuaGCG- -5' |
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5548 | 3' | -56.2 | NC_001806.1 | + | 2825 | 0.7 | 0.696009 |
Target: 5'- cUCgGGCCCCG-GGGGCgUGGAGgggggCGCg -3' miRNA: 3'- cAGgUCGGGGUgCUCCG-AUCUUa----GCG- -5' |
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5548 | 3' | -56.2 | NC_001806.1 | + | 141907 | 0.7 | 0.706067 |
Target: 5'- gGUCCAGUCCa--GAGGCgccgAG-GUCGCc -3' miRNA: 3'- -CAGGUCGGGgugCUCCGa---UCuUAGCG- -5' |
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5548 | 3' | -56.2 | NC_001806.1 | + | 88964 | 0.7 | 0.706067 |
Target: 5'- gGUCCAcgccGCCCCAC-AGGCgcGAG-CGCc -3' miRNA: 3'- -CAGGU----CGGGGUGcUCCGauCUUaGCG- -5' |
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5548 | 3' | -56.2 | NC_001806.1 | + | 23785 | 0.7 | 0.716063 |
Target: 5'- -cCCAcCCCCACGGGGCcgccgGGGGcCGCc -3' miRNA: 3'- caGGUcGGGGUGCUCCGa----UCUUaGCG- -5' |
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5548 | 3' | -56.2 | NC_001806.1 | + | 3374 | 0.69 | 0.735829 |
Target: 5'- -gCCAGCCCCGgGAcGGCcgccaGGUCGCc -3' miRNA: 3'- caGGUCGGGGUgCU-CCGauc--UUAGCG- -5' |
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5548 | 3' | -56.2 | NC_001806.1 | + | 148898 | 0.69 | 0.735829 |
Target: 5'- uGUCC-GCCUCG-GAGGC-GGAGUCGUc -3' miRNA: 3'- -CAGGuCGGGGUgCUCCGaUCUUAGCG- -5' |
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5548 | 3' | -56.2 | NC_001806.1 | + | 30282 | 0.69 | 0.735829 |
Target: 5'- -cCCGGCCCC-CGGGGC-GGAGcCGg -3' miRNA: 3'- caGGUCGGGGuGCUCCGaUCUUaGCg -5' |
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5548 | 3' | -56.2 | NC_001806.1 | + | 53882 | 0.7 | 0.665549 |
Target: 5'- --gCAGCCgCGCGGGGaucAGggUCGCc -3' miRNA: 3'- cagGUCGGgGUGCUCCga-UCuuAGCG- -5' |
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5548 | 3' | -56.2 | NC_001806.1 | + | 37942 | 0.7 | 0.665549 |
Target: 5'- cGUCCAccccGCCCCgggGCGGGGUcccccAGggUUGCg -3' miRNA: 3'- -CAGGU----CGGGG---UGCUCCGa----UCuuAGCG- -5' |
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5548 | 3' | -56.2 | NC_001806.1 | + | 135062 | 0.71 | 0.655329 |
Target: 5'- -aCCGGCCCCGCGgggacgcgccGGGCcGGAAaucggCGCc -3' miRNA: 3'- caGGUCGGGGUGC----------UCCGaUCUUa----GCG- -5' |
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5548 | 3' | -56.2 | NC_001806.1 | + | 89117 | 0.86 | 0.090005 |
Target: 5'- cGUCCAGCaCCCGCGGGGCgauGAAUCGa -3' miRNA: 3'- -CAGGUCG-GGGUGCUCCGau-CUUAGCg -5' |
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5548 | 3' | -56.2 | NC_001806.1 | + | 42012 | 0.76 | 0.377965 |
Target: 5'- cUCCGuGCUggCCGCGGGGUUGGggUCGUg -3' miRNA: 3'- cAGGU-CGG--GGUGCUCCGAUCuuAGCG- -5' |
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5548 | 3' | -56.2 | NC_001806.1 | + | 135890 | 0.72 | 0.563472 |
Target: 5'- -cCCGGCCUCGuCGAGGUaGGAA-CGCa -3' miRNA: 3'- caGGUCGGGGU-GCUCCGaUCUUaGCG- -5' |
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5548 | 3' | -56.2 | NC_001806.1 | + | 122196 | 0.72 | 0.573577 |
Target: 5'- -aCCAGCCCCGC-AGGCaGGcGUCGa -3' miRNA: 3'- caGGUCGGGGUGcUCCGaUCuUAGCg -5' |
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5548 | 3' | -56.2 | NC_001806.1 | + | 123833 | 0.72 | 0.604117 |
Target: 5'- aUCCGGCCuCCGCGAgcGGCU----UCGCg -3' miRNA: 3'- cAGGUCGG-GGUGCU--CCGAucuuAGCG- -5' |
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5548 | 3' | -56.2 | NC_001806.1 | + | 81097 | 0.71 | 0.613324 |
Target: 5'- -aCCAGCCUacauCACGugcgcauguuacuGGGCUAGAcgCGCu -3' miRNA: 3'- caGGUCGGG----GUGC-------------UCCGAUCUuaGCG- -5' |
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5548 | 3' | -56.2 | NC_001806.1 | + | 29981 | 0.71 | 0.624593 |
Target: 5'- cGUCUGGCCCCuccgGgGGGGUUGGggUUGg -3' miRNA: 3'- -CAGGUCGGGG----UgCUCCGAUCuuAGCg -5' |
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5548 | 3' | -56.2 | NC_001806.1 | + | 70521 | 0.71 | 0.655329 |
Target: 5'- -cCUGGCCCCcCGAGGCcaugGGGGaCGCg -3' miRNA: 3'- caGGUCGGGGuGCUCCGa---UCUUaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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