Results 1 - 20 of 384 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5550 | 3' | -60.8 | NC_001806.1 | + | 147696 | 0.79 | 0.148862 |
Target: 5'- cGCGggGGCGggcCCCGGAggcgGCgcucgcacgcacgggGCCACGGCCg -3' miRNA: 3'- -CGCuuUCGC---GGGCCU----CG---------------CGGUGCCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 8671 | 0.66 | 0.745714 |
Target: 5'- aGCG-GAGCaGCCacaucaGGAGCGCCccaAauccgcccgacagaaCGGCCa -3' miRNA: 3'- -CGCuUUCG-CGGg-----CCUCGCGG---U---------------GCCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 92924 | 0.76 | 0.211933 |
Target: 5'- gGCGggGcGgGCCUGGAG-GCCGgGGCCc -3' miRNA: 3'- -CGCuuU-CgCGGGCCUCgCGGUgCCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 131963 | 0.76 | 0.206964 |
Target: 5'- uGCGuccuGGCgGCCCuGGAGCGCCAgaccgGGCCg -3' miRNA: 3'- -CGCuu--UCG-CGGG-CCUCGCGGUg----CCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 1670 | 0.77 | 0.192658 |
Target: 5'- cGCaGAAguccGGCGCgCCGG-GCGCCAUGGCg -3' miRNA: 3'- -CG-CUU----UCGCG-GGCCuCGCGGUGCCGg -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 46419 | 0.77 | 0.192658 |
Target: 5'- cGCGucuucuGCGCCgCGGucgGGCGCCugGCGGCCa -3' miRNA: 3'- -CGCuuu---CGCGG-GCC---UCGCGG--UGCCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 62642 | 0.77 | 0.188086 |
Target: 5'- aCGGGAGCGCCU---GCGCCACGGaCCa -3' miRNA: 3'- cGCUUUCGCGGGccuCGCGGUGCC-GG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 30866 | 0.77 | 0.177931 |
Target: 5'- cGCGggGGCcgaggaaguguGCCCGGAagacGCGCCACgcggagacuuccggGGCCg -3' miRNA: 3'- -CGCuuUCG-----------CGGGCCU----CGCGGUG--------------CCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 126477 | 0.78 | 0.174938 |
Target: 5'- uGCGAuacuucGCGCCCGGGcGCGuCCcCGGCCc -3' miRNA: 3'- -CGCUuu----CGCGGGCCU-CGC-GGuGCCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 4377 | 0.78 | 0.170741 |
Target: 5'- cGCGggGGUccucgccgccGCCCGGGGCuugGgCGCGGCCu -3' miRNA: 3'- -CGCuuUCG----------CGGGCCUCG---CgGUGCCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 24627 | 0.78 | 0.162615 |
Target: 5'- cGCGcuGGgGCCUGGGcGCGCCgcuGCGGCCc -3' miRNA: 3'- -CGCuuUCgCGGGCCU-CGCGG---UGCCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 140030 | 1.13 | 0.000612 |
Target: 5'- gGCGAAAGCGCCCGGAGCGCCACGGCCg -3' miRNA: 3'- -CGCUUUCGCGGGCCUCGCGGUGCCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 23131 | 0.79 | 0.147401 |
Target: 5'- cGCGGGAcccGCGCCUGccGAGCuCCGCGGCCg -3' miRNA: 3'- -CGCUUU---CGCGGGC--CUCGcGGUGCCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 70149 | 0.79 | 0.143806 |
Target: 5'- uCGAAccGGcCGCCCGGGGCgGCCuCGGCCc -3' miRNA: 3'- cGCUU--UC-GCGGGCCUCG-CGGuGCCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 33361 | 0.8 | 0.130213 |
Target: 5'- uGCaGGGGgGCCCGGAGaGCCGCGGCa -3' miRNA: 3'- -CGcUUUCgCGGGCCUCgCGGUGCCGg -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 62934 | 0.8 | 0.127005 |
Target: 5'- cGCGGccGGGCGUCCGGAaaGCGCUcccagugaaaGCGGCCg -3' miRNA: 3'- -CGCU--UUCGCGGGCCU--CGCGG----------UGCCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 144561 | 0.8 | 0.120807 |
Target: 5'- uGCGAAAgacuuuccgggcGCGUCCGG-GUGCCGCGGCUc -3' miRNA: 3'- -CGCUUU------------CGCGGGCCuCGCGGUGCCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 4302 | 0.8 | 0.120807 |
Target: 5'- cGUG-AAGCgGCCCGuGGCGUCGCGGCCg -3' miRNA: 3'- -CGCuUUCG-CGGGCcUCGCGGUGCCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 33107 | 0.81 | 0.109247 |
Target: 5'- gGCGAGcggguccggacGGgGCCCGGAcCGCCGCGGUCg -3' miRNA: 3'- -CGCUU-----------UCgCGGGCCUcGCGGUGCCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 2773 | 0.84 | 0.067233 |
Target: 5'- gGCGGGccugcgccgcGGCgGCCCGGGGCGCCGCGGgCu -3' miRNA: 3'- -CGCUU----------UCG-CGGGCCUCGCGGUGCCgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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