miRNA display CGI


Results 1 - 20 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5550 3' -60.8 NC_001806.1 + 94151 0.66 0.703003
Target:  5'- aGCuGAAcGCGCUucaggugCGG-GCGCUGCGGCg -3'
miRNA:   3'- -CG-CUUuCGCGG-------GCCuCGCGGUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 78688 0.66 0.694303
Target:  5'- cUGGgcGCGCCCGucgucguGGCGCuccgcaacacCACGGCCu -3'
miRNA:   3'- cGCUuuCGCGGGCc------UCGCG----------GUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 26640 0.66 0.694303
Target:  5'- cCGAGccGGCGCCa-GAG-GCC-CGGCCc -3'
miRNA:   3'- cGCUU--UCGCGGgcCUCgCGGuGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 132063 0.66 0.694303
Target:  5'- -aGAGAGCGUCgUGGGGC-CCGCccGCCg -3'
miRNA:   3'- cgCUUUCGCGG-GCCUCGcGGUGc-CGG- -5'
5550 3' -60.8 NC_001806.1 + 65444 0.66 0.694303
Target:  5'- -aGGGAGCG---GGGGaUGCCGCGGCCc -3'
miRNA:   3'- cgCUUUCGCgggCCUC-GCGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 132686 0.66 0.694303
Target:  5'- cUGggGGCcugGCCCGcgguGGGgGCCAgGGUCg -3'
miRNA:   3'- cGCuuUCG---CGGGC----CUCgCGGUgCCGG- -5'
5550 3' -60.8 NC_001806.1 + 120865 0.66 0.703967
Target:  5'- gGCGGccccuGGCGCcgccuggucccCCGGGGaccuuGCCcCGGCCg -3'
miRNA:   3'- -CGCUu----UCGCG-----------GGCCUCg----CGGuGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 140685 0.66 0.693334
Target:  5'- uGCGc-GGCGCCCGc-GUGCCGCGcuggaacGCCc -3'
miRNA:   3'- -CGCuuUCGCGGGCcuCGCGGUGC-------CGG- -5'
5550 3' -60.8 NC_001806.1 + 113052 0.66 0.703967
Target:  5'- cGCGAccccgucgAAGcCGCCaauccguaCGGGGCGUacgugGCGGCCc -3'
miRNA:   3'- -CGCU--------UUC-GCGG--------GCCUCGCGg----UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 26702 0.66 0.703967
Target:  5'- gGCGu--GgGCCCGGGGgGCgG-GGCUg -3'
miRNA:   3'- -CGCuuuCgCGGGCCUCgCGgUgCCGG- -5'
5550 3' -60.8 NC_001806.1 + 2813 0.66 0.703967
Target:  5'- gGCGggGGCGggcucgggcCCCgGGGGCGUggaggggggCGCGGgCg -3'
miRNA:   3'- -CGCuuUCGC---------GGG-CCUCGCG---------GUGCCgG- -5'
5550 3' -60.8 NC_001806.1 + 26834 0.66 0.694303
Target:  5'- gGgGAGGGgGCgCCGGAGCcccCCGCGaCCc -3'
miRNA:   3'- -CgCUUUCgCG-GGCCUCGc--GGUGCcGG- -5'
5550 3' -60.8 NC_001806.1 + 8671 0.66 0.745714
Target:  5'- aGCG-GAGCaGCCacaucaGGAGCGCCccaAauccgcccgacagaaCGGCCa -3'
miRNA:   3'- -CGCuUUCG-CGGg-----CCUCGCGG---U---------------GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 27827 0.66 0.698175
Target:  5'- uUGggGGCGCCgGGuugguccccggggacGGgGCCGCcccgcggugGGCCu -3'
miRNA:   3'- cGCuuUCGCGGgCC---------------UCgCGGUG---------CCGG- -5'
5550 3' -60.8 NC_001806.1 + 139332 0.66 0.694303
Target:  5'- aGCGAGuuuGUcgaGUCCauugacucuacGGAGCugGCCAUGGCCa -3'
miRNA:   3'- -CGCUUu--CG---CGGG-----------CCUCG--CGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 127899 0.66 0.703967
Target:  5'- gGCGcgGGUGCagCGGAGC---ACGGCCa -3'
miRNA:   3'- -CGCuuUCGCGg-GCCUCGcggUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 41400 0.66 0.694303
Target:  5'- cGCGGAuGCGaUCCGuGAGcCGCCugcccaGCGcGCCg -3'
miRNA:   3'- -CGCUUuCGC-GGGC-CUC-GCGG------UGC-CGG- -5'
5550 3' -60.8 NC_001806.1 + 136338 0.66 0.703003
Target:  5'- uCGAAggccAGCGCcagcucaaaaaacCCGGGGCcggcgcgcuCCGCGGCCu -3'
miRNA:   3'- cGCUU----UCGCG-------------GGCCUCGc--------GGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 74560 0.66 0.689453
Target:  5'- cGCGGccuuuguuccuGCGCCCGGcGCGUCgcccuaccccgacgACGGCg -3'
miRNA:   3'- -CGCUuu---------CGCGGGCCuCGCGG--------------UGCCGg -5'
5550 3' -60.8 NC_001806.1 + 138734 0.66 0.694303
Target:  5'- gGCGGAGauucugucucuGCGCCCcaaaucuucgGGGGUGCCGacgcaGGCg -3'
miRNA:   3'- -CGCUUU-----------CGCGGG----------CCUCGCGGUg----CCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.