Results 1 - 20 of 384 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5550 | 3' | -60.8 | NC_001806.1 | + | 54 | 0.67 | 0.684591 |
Target: 5'- -gGggGGgGCCCGuuuucGGCGUC-UGGCCg -3' miRNA: 3'- cgCuuUCgCGGGCc----UCGCGGuGCCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 333 | 0.68 | 0.615912 |
Target: 5'- cGCGcacGcCGCCCGGAcCGCCGCccGCCu -3' miRNA: 3'- -CGCuuuC-GCGGGCCUcGCGGUGc-CGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 383 | 0.73 | 0.348813 |
Target: 5'- cGCGggGG-GCCCGG-GCuGCCACaGGUg -3' miRNA: 3'- -CGCuuUCgCGGGCCuCG-CGGUG-CCGg -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 1421 | 0.69 | 0.547748 |
Target: 5'- cCGAGgcccAGCGaauCCCGGgcGGCGCCGgCGGCa -3' miRNA: 3'- cGCUU----UCGC---GGGCC--UCGCGGU-GCCGg -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 1524 | 0.67 | 0.670929 |
Target: 5'- gGCGcgGGCGCaaaagucccuccgCGGcccGCGCCACcgGGCCg -3' miRNA: 3'- -CGCuuUCGCGg------------GCCu--CGCGGUG--CCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 1615 | 0.66 | 0.732591 |
Target: 5'- aGCGGc-GCGCCCaGGccccAGCGCgCGCaGGCg -3' miRNA: 3'- -CGCUuuCGCGGG-CC----UCGCG-GUG-CCGg -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 1670 | 0.77 | 0.192658 |
Target: 5'- cGCaGAAguccGGCGCgCCGG-GCGCCAUGGCg -3' miRNA: 3'- -CG-CUU----UCGCG-GGCCuCGCGGUGCCGg -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 1712 | 0.7 | 0.500524 |
Target: 5'- cCGAGGccGcCGCCCGGccguccAGCGCCggcagcACGGCCc -3' miRNA: 3'- cGCUUU--C-GCGGGCC------UCGCGG------UGCCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 1811 | 0.69 | 0.528666 |
Target: 5'- cGCGguAGCGCaCGuuGcCGCCGCGGCa -3' miRNA: 3'- -CGCuuUCGCGgGCcuC-GCGGUGCCGg -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 1846 | 0.7 | 0.464078 |
Target: 5'- aGCGgcGGCGCgUCGGgguacaGGCGCgcgugCGCGGCCu -3' miRNA: 3'- -CGCuuUCGCG-GGCC------UCGCG-----GUGCCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 1893 | 0.66 | 0.741982 |
Target: 5'- cGCGAAGaCcCCCGGGcCGaacaCGCGGCCc -3' miRNA: 3'- -CGCUUUcGcGGGCCUcGCg---GUGCCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 2219 | 0.68 | 0.576755 |
Target: 5'- gGCGGccGUGUCCGGcccgcacagccGGUugGCCAgGGCCg -3' miRNA: 3'- -CGCUuuCGCGGGCC-----------UCG--CGGUgCCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 2421 | 0.67 | 0.674839 |
Target: 5'- aGCGGgcccgAGGCGCgCaGGGgGCCaaagagGCGGCCc -3' miRNA: 3'- -CGCU-----UUCGCGgGcCUCgCGG------UGCCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 2522 | 0.72 | 0.394848 |
Target: 5'- gGCGggGGCggGCCCGGcgcaccgcgcGGCgaucgagGCCAgGGCCc -3' miRNA: 3'- -CGCuuUCG--CGGGCC----------UCG-------CGGUgCCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 2610 | 0.69 | 0.557372 |
Target: 5'- aGCGGGuG-GUCCGuGAGCucgGCCACGGCg -3' miRNA: 3'- -CGCUUuCgCGGGC-CUCG---CGGUGCCGg -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 2662 | 0.69 | 0.538178 |
Target: 5'- -gGgcGGCGgCCGcGGGCGCCGCcguguggcugGGCCc -3' miRNA: 3'- cgCuuUCGCgGGC-CUCGCGGUG----------CCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 2773 | 0.84 | 0.067233 |
Target: 5'- gGCGGGccugcgccgcGGCgGCCCGGGGCGCCGCGGgCu -3' miRNA: 3'- -CGCUU----------UCG-CGGGCCUCGCGGUGCCgG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 2813 | 0.66 | 0.703967 |
Target: 5'- gGCGggGGCGggcucgggcCCCgGGGGCGUggaggggggCGCGGgCg -3' miRNA: 3'- -CGCuuUCGC---------GGG-CCUCGCG---------GUGCCgG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 2870 | 0.7 | 0.509834 |
Target: 5'- gGCGcgGGCGUCCgagccgGGGGCGuCCGC-GCCg -3' miRNA: 3'- -CGCuuUCGCGGG------CCUCGC-GGUGcCGG- -5' |
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5550 | 3' | -60.8 | NC_001806.1 | + | 2968 | 0.69 | 0.564137 |
Target: 5'- uGCGcuuGCGCCCcucccgcggcgcggGGAgGCgGCgGCGGCCg -3' miRNA: 3'- -CGCuuuCGCGGG--------------CCU-CG-CGgUGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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