miRNA display CGI


Results 1 - 20 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5550 3' -60.8 NC_001806.1 + 54 0.67 0.684591
Target:  5'- -gGggGGgGCCCGuuuucGGCGUC-UGGCCg -3'
miRNA:   3'- cgCuuUCgCGGGCc----UCGCGGuGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 333 0.68 0.615912
Target:  5'- cGCGcacGcCGCCCGGAcCGCCGCccGCCu -3'
miRNA:   3'- -CGCuuuC-GCGGGCCUcGCGGUGc-CGG- -5'
5550 3' -60.8 NC_001806.1 + 383 0.73 0.348813
Target:  5'- cGCGggGG-GCCCGG-GCuGCCACaGGUg -3'
miRNA:   3'- -CGCuuUCgCGGGCCuCG-CGGUG-CCGg -5'
5550 3' -60.8 NC_001806.1 + 1421 0.69 0.547748
Target:  5'- cCGAGgcccAGCGaauCCCGGgcGGCGCCGgCGGCa -3'
miRNA:   3'- cGCUU----UCGC---GGGCC--UCGCGGU-GCCGg -5'
5550 3' -60.8 NC_001806.1 + 1524 0.67 0.670929
Target:  5'- gGCGcgGGCGCaaaagucccuccgCGGcccGCGCCACcgGGCCg -3'
miRNA:   3'- -CGCuuUCGCGg------------GCCu--CGCGGUG--CCGG- -5'
5550 3' -60.8 NC_001806.1 + 1615 0.66 0.732591
Target:  5'- aGCGGc-GCGCCCaGGccccAGCGCgCGCaGGCg -3'
miRNA:   3'- -CGCUuuCGCGGG-CC----UCGCG-GUG-CCGg -5'
5550 3' -60.8 NC_001806.1 + 1670 0.77 0.192658
Target:  5'- cGCaGAAguccGGCGCgCCGG-GCGCCAUGGCg -3'
miRNA:   3'- -CG-CUU----UCGCG-GGCCuCGCGGUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 1712 0.7 0.500524
Target:  5'- cCGAGGccGcCGCCCGGccguccAGCGCCggcagcACGGCCc -3'
miRNA:   3'- cGCUUU--C-GCGGGCC------UCGCGG------UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 1811 0.69 0.528666
Target:  5'- cGCGguAGCGCaCGuuGcCGCCGCGGCa -3'
miRNA:   3'- -CGCuuUCGCGgGCcuC-GCGGUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 1846 0.7 0.464078
Target:  5'- aGCGgcGGCGCgUCGGgguacaGGCGCgcgugCGCGGCCu -3'
miRNA:   3'- -CGCuuUCGCG-GGCC------UCGCG-----GUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 1893 0.66 0.741982
Target:  5'- cGCGAAGaCcCCCGGGcCGaacaCGCGGCCc -3'
miRNA:   3'- -CGCUUUcGcGGGCCUcGCg---GUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 2219 0.68 0.576755
Target:  5'- gGCGGccGUGUCCGGcccgcacagccGGUugGCCAgGGCCg -3'
miRNA:   3'- -CGCUuuCGCGGGCC-----------UCG--CGGUgCCGG- -5'
5550 3' -60.8 NC_001806.1 + 2421 0.67 0.674839
Target:  5'- aGCGGgcccgAGGCGCgCaGGGgGCCaaagagGCGGCCc -3'
miRNA:   3'- -CGCU-----UUCGCGgGcCUCgCGG------UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 2522 0.72 0.394848
Target:  5'- gGCGggGGCggGCCCGGcgcaccgcgcGGCgaucgagGCCAgGGCCc -3'
miRNA:   3'- -CGCuuUCG--CGGGCC----------UCG-------CGGUgCCGG- -5'
5550 3' -60.8 NC_001806.1 + 2610 0.69 0.557372
Target:  5'- aGCGGGuG-GUCCGuGAGCucgGCCACGGCg -3'
miRNA:   3'- -CGCUUuCgCGGGC-CUCG---CGGUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 2662 0.69 0.538178
Target:  5'- -gGgcGGCGgCCGcGGGCGCCGCcguguggcugGGCCc -3'
miRNA:   3'- cgCuuUCGCgGGC-CUCGCGGUG----------CCGG- -5'
5550 3' -60.8 NC_001806.1 + 2773 0.84 0.067233
Target:  5'- gGCGGGccugcgccgcGGCgGCCCGGGGCGCCGCGGgCu -3'
miRNA:   3'- -CGCUU----------UCG-CGGGCCUCGCGGUGCCgG- -5'
5550 3' -60.8 NC_001806.1 + 2813 0.66 0.703967
Target:  5'- gGCGggGGCGggcucgggcCCCgGGGGCGUggaggggggCGCGGgCg -3'
miRNA:   3'- -CGCuuUCGC---------GGG-CCUCGCG---------GUGCCgG- -5'
5550 3' -60.8 NC_001806.1 + 2870 0.7 0.509834
Target:  5'- gGCGcgGGCGUCCgagccgGGGGCGuCCGC-GCCg -3'
miRNA:   3'- -CGCuuUCGCGGG------CCUCGC-GGUGcCGG- -5'
5550 3' -60.8 NC_001806.1 + 2968 0.69 0.564137
Target:  5'- uGCGcuuGCGCCCcucccgcggcgcggGGAgGCgGCgGCGGCCg -3'
miRNA:   3'- -CGCuuuCGCGGG--------------CCU-CG-CGgUGCCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.