miRNA display CGI


Results 21 - 40 of 384 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5550 3' -60.8 NC_001806.1 + 3016 0.73 0.326917
Target:  5'- cGCGucggcGGCGUCCGGuGCGCU--GGCCg -3'
miRNA:   3'- -CGCuu---UCGCGGGCCuCGCGGugCCGG- -5'
5550 3' -60.8 NC_001806.1 + 3122 0.69 0.567042
Target:  5'- cGCGGGucccgcGGCaGCgCGGGGC-CCAgGGCCc -3'
miRNA:   3'- -CGCUU------UCG-CGgGCCUCGcGGUgCCGG- -5'
5550 3' -60.8 NC_001806.1 + 3288 0.69 0.567042
Target:  5'- gGCG-GGGCGCgUCGGcGUGCgGCGGCg -3'
miRNA:   3'- -CGCuUUCGCG-GGCCuCGCGgUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 3316 0.68 0.625746
Target:  5'- cGgGGAAGCgggGCCCGcGGGUcCCucCGGCCg -3'
miRNA:   3'- -CgCUUUCG---CGGGC-CUCGcGGu-GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 3347 0.67 0.665055
Target:  5'- cGCGggGG-GCUgGcGGGCcggGCCcCGGCCa -3'
miRNA:   3'- -CGCuuUCgCGGgC-CUCG---CGGuGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 3478 0.7 0.482135
Target:  5'- gGCGc-GGCGCCCGGcGuCGUCGuCGGCg -3'
miRNA:   3'- -CGCuuUCGCGGGCCuC-GCGGU-GCCGg -5'
5550 3' -60.8 NC_001806.1 + 3616 0.7 0.509834
Target:  5'- cGCGcGcuCGCCCGGuGCgGCgGCGGCg -3'
miRNA:   3'- -CGCuUucGCGGGCCuCG-CGgUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 3667 0.75 0.261391
Target:  5'- uGCGccGGCG-CCGGGGCuccCCGCGGCCc -3'
miRNA:   3'- -CGCuuUCGCgGGCCUCGc--GGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 3706 0.68 0.576755
Target:  5'- cGCGuucucgcGCGCCaacaGGGGCGCguaggCGCGGCg -3'
miRNA:   3'- -CGCuuu----CGCGGg---CCUCGCG-----GUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 3828 0.72 0.403856
Target:  5'- aGCcGAAGCGgCCGGc-CGCCAUGGCg -3'
miRNA:   3'- -CGcUUUCGCgGGCCucGCGGUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 3928 0.73 0.334101
Target:  5'- cCGGAAGCagGCCUGGuccAGCGCCACGuCCc -3'
miRNA:   3'- cGCUUUCG--CGGGCC---UCGCGGUGCcGG- -5'
5550 3' -60.8 NC_001806.1 + 4057 0.75 0.267432
Target:  5'- aGCucGGGCGCCCacacggccgccGGGGCGCCcgaGGCCu -3'
miRNA:   3'- -CGcuUUCGCGGG-----------CCUCGCGGug-CCGG- -5'
5550 3' -60.8 NC_001806.1 + 4181 0.75 0.255462
Target:  5'- cCGggGGCggggGCCCGGcGCcggGCCACGGCUc -3'
miRNA:   3'- cGCuuUCG----CGGGCCuCG---CGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 4232 0.68 0.576755
Target:  5'- cGCGAuAGCGCgCGuagaaGGCGCCGgaGGUCg -3'
miRNA:   3'- -CGCUuUCGCGgGCc----UCGCGGUg-CCGG- -5'
5550 3' -60.8 NC_001806.1 + 4263 0.66 0.722168
Target:  5'- cGCGucGGCGUccagcucgacccgCCGGGGCuGCC-CGGCn -3'
miRNA:   3'- -CGCuuUCGCG-------------GGCCUCG-CGGuGCCGg -5'
5550 3' -60.8 NC_001806.1 + 4302 0.8 0.120807
Target:  5'- cGUG-AAGCgGCCCGuGGCGUCGCGGCCg -3'
miRNA:   3'- -CGCuUUCG-CGGGCcUCGCGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 4338 0.73 0.326917
Target:  5'- cGCGc--GgGCCCGGcGGCGCUcgauGCGGCCc -3'
miRNA:   3'- -CGCuuuCgCGGGCC-UCGCGG----UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 4377 0.78 0.170741
Target:  5'- cGCGggGGUccucgccgccGCCCGGGGCuugGgCGCGGCCu -3'
miRNA:   3'- -CGCuuUCG----------CGGGCCUCG---CgGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 4438 0.72 0.385973
Target:  5'- gGCGggGGCggcguccGCCCGGgggcugccGGCGCCGCGcucgacggaccccGCCc -3'
miRNA:   3'- -CGCuuUCG-------CGGGCC--------UCGCGGUGC-------------CGG- -5'
5550 3' -60.8 NC_001806.1 + 4688 0.71 0.428212
Target:  5'- gGCGGuccguGGgGUCCGGAuacGCGCCGCguagcggGGCCu -3'
miRNA:   3'- -CGCUu----UCgCGGGCCU---CGCGGUG-------CCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.