miRNA display CGI


Results 21 - 40 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5550 3' -60.8 NC_001806.1 + 147648 0.66 0.723119
Target:  5'- gGCGc--GCGuCCgCGGGGCGg-GCGGCCg -3'
miRNA:   3'- -CGCuuuCGC-GG-GCCUCGCggUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 147491 0.72 0.387576
Target:  5'- aGCGGGgcGGCGCCggaGGgggcGGCGCCGCGGg- -3'
miRNA:   3'- -CGCUU--UCGCGGg--CC----UCGCGGUGCCgg -5'
5550 3' -60.8 NC_001806.1 + 147217 0.69 0.528666
Target:  5'- gGCGGAagaGGCGgccCCCGcGGGgGUCGgGGCCg -3'
miRNA:   3'- -CGCUU---UCGC---GGGC-CUCgCGGUgCCGG- -5'
5550 3' -60.8 NC_001806.1 + 147187 0.67 0.674839
Target:  5'- gGCGGAAGCGga-GGAG-GaCGCGGCCc -3'
miRNA:   3'- -CGCUUUCGCgggCCUCgCgGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 146841 0.66 0.713575
Target:  5'- uGCGgcGGCuccagCCGGGGa-CCGCGGCCc -3'
miRNA:   3'- -CGCuuUCGcg---GGCCUCgcGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 146695 0.7 0.482135
Target:  5'- uGCGGAaguccaGGCGCCCacuaGGGUGCCcUGGUCg -3'
miRNA:   3'- -CGCUU------UCGCGGGc---CUCGCGGuGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 146181 0.68 0.596285
Target:  5'- gGUGGucAGGCaGCCCGG---GCCGCGGCUc -3'
miRNA:   3'- -CGCU--UUCG-CGGGCCucgCGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 145260 0.68 0.596285
Target:  5'- -aGggGGCGCCCcaGAG-GCUAagguCGGCCa -3'
miRNA:   3'- cgCuuUCGCGGGc-CUCgCGGU----GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 145165 0.67 0.683618
Target:  5'- uCGAGGGCGcCCCGGugucguucaacaaAGaCGCCGCGuuuCCa -3'
miRNA:   3'- cGCUUUCGC-GGGCC-------------UC-GCGGUGCc--GG- -5'
5550 3' -60.8 NC_001806.1 + 144989 0.71 0.411321
Target:  5'- gGCGGAcccaaggGGCcccgGCCCGGGGCcCCacaACGGCCc -3'
miRNA:   3'- -CGCUU-------UCG----CGGGCCUCGcGG---UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 144794 0.68 0.576755
Target:  5'- gGCGAAGGCcgcguacgGCCCGGGaCGaggggcccccgaCCGCGGCg -3'
miRNA:   3'- -CGCUUUCG--------CGGGCCUcGC------------GGUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 144632 0.66 0.741982
Target:  5'- gGCGucGGCGacauccuccCCCuaAGCGCCGgcCGGCCg -3'
miRNA:   3'- -CGCuuUCGC---------GGGccUCGCGGU--GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 144561 0.8 0.120807
Target:  5'- uGCGAAAgacuuuccgggcGCGUCCGG-GUGCCGCGGCUc -3'
miRNA:   3'- -CGCUUU------------CGCGGGCCuCGCGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 144256 0.67 0.673862
Target:  5'- gGCaGAAAG-GCCCaGAGUcauuguuuaugugGCCGCgGGCCa -3'
miRNA:   3'- -CG-CUUUCgCGGGcCUCG-------------CGGUG-CCGG- -5'
5550 3' -60.8 NC_001806.1 + 142111 0.66 0.703967
Target:  5'- --aGAGGCGCCgGGAGUgggGUCGuCGGCg -3'
miRNA:   3'- cgcUUUCGCGGgCCUCG---CGGU-GCCGg -5'
5550 3' -60.8 NC_001806.1 + 142006 0.74 0.292725
Target:  5'- aGCGGgaccagccucuaGGGCGgCgaGGAGCGCCGcCGGCCc -3'
miRNA:   3'- -CGCU------------UUCGCgGg-CCUCGCGGU-GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 141392 0.66 0.703967
Target:  5'- gGCGugugugccccAGAGCauaaacaccaGgCCGGGGCgGCgCGCGGCCa -3'
miRNA:   3'- -CGC----------UUUCG----------CgGGCCUCG-CG-GUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 140685 0.66 0.693334
Target:  5'- uGCGc-GGCGCCCGc-GUGCCGCGcuggaacGCCc -3'
miRNA:   3'- -CGCuuUCGCGGGCcuCGCGGUGC-------CGG- -5'
5550 3' -60.8 NC_001806.1 + 140030 1.13 0.000612
Target:  5'- gGCGAAAGCGCCCGGAGCGCCACGGCCg -3'
miRNA:   3'- -CGCUUUCGCGGGCCUCGCGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 139813 0.72 0.3796
Target:  5'- cGCGAucaugguacGGgGCCgGGAGCGCCA-GGaCCg -3'
miRNA:   3'- -CGCUu--------UCgCGGgCCUCGCGGUgCC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.