miRNA display CGI


Results 21 - 40 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5550 3' -60.8 NC_001806.1 + 92924 0.76 0.211933
Target:  5'- gGCGggGcGgGCCUGGAG-GCCGgGGCCc -3'
miRNA:   3'- -CGCuuU-CgCGGGCCUCgCGGUgCCGG- -5'
5550 3' -60.8 NC_001806.1 + 20615 0.76 0.217004
Target:  5'- cGCGGAugggcGGgGCCgGGGGUucgaccaacggGCCGCGGCCa -3'
miRNA:   3'- -CGCUU-----UCgCGGgCCUCG-----------CGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 77105 0.76 0.217004
Target:  5'- gGCGuccuGGGCGCCaaGAGCGCCGagcgGGCCg -3'
miRNA:   3'- -CGCu---UUCGCGGgcCUCGCGGUg---CCGG- -5'
5550 3' -60.8 NC_001806.1 + 147746 0.76 0.217004
Target:  5'- cGCGggGGCGCgCGGGuccCGaCGCGGCCg -3'
miRNA:   3'- -CGCuuUCGCGgGCCUc--GCgGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 84098 0.75 0.238334
Target:  5'- cGCG-GAG-GCCCGucGCGCCACGGUCc -3'
miRNA:   3'- -CGCuUUCgCGGGCcuCGCGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 151530 0.75 0.238334
Target:  5'- uGgGAcGGCGCCCGuGGGC-CCggGCGGCCg -3'
miRNA:   3'- -CgCUuUCGCGGGC-CUCGcGG--UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 50653 0.75 0.238334
Target:  5'- uGCGGGgacgcgcaccGGCGCCgGGAcGaCGCgGCGGCCa -3'
miRNA:   3'- -CGCUU----------UCGCGGgCCU-C-GCGgUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 26255 0.75 0.238334
Target:  5'- gGCGGcGGGCaGCCCGG-GCcccCCGCGGCCg -3'
miRNA:   3'- -CGCU-UUCG-CGGGCCuCGc--GGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 81670 0.75 0.251957
Target:  5'- gGCGAAGGCGUCCGGAacgcacuggcgauuaGgGCgGCGGUg -3'
miRNA:   3'- -CGCUUUCGCGGGCCU---------------CgCGgUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 25518 0.75 0.255462
Target:  5'- cGCGGGAcGCGCCgGgGAGgGCUggGGCCg -3'
miRNA:   3'- -CGCUUU-CGCGGgC-CUCgCGGugCCGG- -5'
5550 3' -60.8 NC_001806.1 + 4181 0.75 0.255462
Target:  5'- cCGggGGCggggGCCCGGcGCcggGCCACGGCUc -3'
miRNA:   3'- cGCuuUCG----CGGGCCuCG---CGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 80252 0.75 0.255462
Target:  5'- gGCGGuguuGCGCCCGGAG-GCC-CGGUUu -3'
miRNA:   3'- -CGCUuu--CGCGGGCCUCgCGGuGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 30248 0.75 0.255462
Target:  5'- uGCGAGcgccgccuccGGgGCCCGGcccccGCGCCcCGGCCc -3'
miRNA:   3'- -CGCUU----------UCgCGGGCCu----CGCGGuGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 3667 0.75 0.261391
Target:  5'- uGCGccGGCG-CCGGGGCuccCCGCGGCCc -3'
miRNA:   3'- -CGCuuUCGCgGGCCUCGc--GGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 77178 0.75 0.265608
Target:  5'- cCGAccuGAGCGCCCGGcugcgggacgagguGGUGCCAagggUGGCCu -3'
miRNA:   3'- cGCU---UUCGCGGGCC--------------UCGCGGU----GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 109295 0.75 0.266823
Target:  5'- gGCGGAGGCGCCggcgaaacgccagCGGGGCcCaCGCGGUCa -3'
miRNA:   3'- -CGCUUUCGCGG-------------GCCUCGcG-GUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 148180 0.75 0.267432
Target:  5'- cGUGggGGgGCgCGGGGCGUC-CGGCg -3'
miRNA:   3'- -CGCuuUCgCGgGCCUCGCGGuGCCGg -5'
5550 3' -60.8 NC_001806.1 + 86385 0.75 0.267432
Target:  5'- cGCG-GGGCGCUCGGcuaaCGCgGCGGCCg -3'
miRNA:   3'- -CGCuUUCGCGGGCCuc--GCGgUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 4057 0.75 0.267432
Target:  5'- aGCucGGGCGCCCacacggccgccGGGGCGCCcgaGGCCu -3'
miRNA:   3'- -CGcuUUCGCGGG-----------CCUCGCGGug-CCGG- -5'
5550 3' -60.8 NC_001806.1 + 49349 0.75 0.267432
Target:  5'- cGCc-GAGCGuCCCGGcAGCGCCccgggcccgauGCGGCCc -3'
miRNA:   3'- -CGcuUUCGC-GGGCC-UCGCGG-----------UGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.