miRNA display CGI


Results 41 - 60 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5550 3' -60.8 NC_001806.1 + 67987 0.75 0.267432
Target:  5'- uGCGggGGU-CCUGGAGgGCCGCGGg- -3'
miRNA:   3'- -CGCuuUCGcGGGCCUCgCGGUGCCgg -5'
5550 3' -60.8 NC_001806.1 + 117353 0.74 0.279851
Target:  5'- aGCGAAuGUGUgCGGAGguccgGCCugGGCCg -3'
miRNA:   3'- -CGCUUuCGCGgGCCUCg----CGGugCCGG- -5'
5550 3' -60.8 NC_001806.1 + 22864 0.74 0.279851
Target:  5'- gGCGAccuGGCGgccguCCCGGGGCugGCCGgGGCCc -3'
miRNA:   3'- -CGCUu--UCGC-----GGGCCUCG--CGGUgCCGG- -5'
5550 3' -60.8 NC_001806.1 + 50082 0.74 0.286231
Target:  5'- gGCGuu-GCGuCCCGucGGgGCCGCGGCCg -3'
miRNA:   3'- -CGCuuuCGC-GGGCc-UCgCGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 95312 0.74 0.286231
Target:  5'- gGCGGAcGCGCCCaaGGGCGgCGCgGGCCc -3'
miRNA:   3'- -CGCUUuCGCGGGc-CUCGCgGUG-CCGG- -5'
5550 3' -60.8 NC_001806.1 + 148134 0.74 0.286231
Target:  5'- uGCGuGAGaCGCCCcgcccgucacggGGGGCGCgGCGGCg -3'
miRNA:   3'- -CGCuUUC-GCGGG------------CCUCGCGgUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 56449 0.74 0.292725
Target:  5'- gGCGGAAGCGCCUGacacAGCuccGUCAgGGCCa -3'
miRNA:   3'- -CGCUUUCGCGGGCc---UCG---CGGUgCCGG- -5'
5550 3' -60.8 NC_001806.1 + 40574 0.74 0.292725
Target:  5'- aUGGAAGCGCCgCGGgucGGCGUgCGCGGCg -3'
miRNA:   3'- cGCUUUCGCGG-GCC---UCGCG-GUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 30198 0.74 0.292725
Target:  5'- cGCGGccGCGUCgGGAcccgcGCGCCcccgcGCGGCCg -3'
miRNA:   3'- -CGCUuuCGCGGgCCU-----CGCGG-----UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 142006 0.74 0.292725
Target:  5'- aGCGGgaccagccucuaGGGCGgCgaGGAGCGCCGcCGGCCc -3'
miRNA:   3'- -CGCU------------UUCGCgGg-CCUCGCGGU-GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 34310 0.74 0.298667
Target:  5'- gGCGggGggcggcGCGCCggaCGGGGCGCUggagauaACGGCCc -3'
miRNA:   3'- -CGCuuU------CGCGG---GCCUCGCGG-------UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 26956 0.74 0.299333
Target:  5'- uCGGccGCccGCCUGGcGCGCCGCGGCUc -3'
miRNA:   3'- cGCUuuCG--CGGGCCuCGCGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 23459 0.74 0.299333
Target:  5'- cGCG---GCGCCCcGGGcCGCCGCGGCg -3'
miRNA:   3'- -CGCuuuCGCGGGcCUC-GCGGUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 91046 0.74 0.306057
Target:  5'- uCGAAcAGCGCCUGGccucCGUCAUGGCCg -3'
miRNA:   3'- cGCUU-UCGCGGGCCuc--GCGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 22143 0.74 0.312895
Target:  5'- gGCGGAggaGGCGCgacgCCGGuucgaggccucgGGCGCCccgGCGGCCg -3'
miRNA:   3'- -CGCUU---UCGCG----GGCC------------UCGCGG---UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 137658 0.74 0.312895
Target:  5'- cCGAGGGCGCCCuGAcGCgguugGCCcCGGCCa -3'
miRNA:   3'- cGCUUUCGCGGGcCU-CG-----CGGuGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 107388 0.74 0.312895
Target:  5'- aGCGGGAacGCGCCCgccGGAGCcuucugauaGCCuCGGCCc -3'
miRNA:   3'- -CGCUUU--CGCGGG---CCUCG---------CGGuGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 23554 0.73 0.31775
Target:  5'- gGCGgcAGCcCCCGGGGCccaGCCacacggcggcgcccGCGGCCg -3'
miRNA:   3'- -CGCuuUCGcGGGCCUCG---CGG--------------UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 95613 0.73 0.319849
Target:  5'- gGCGAGGuGCuGCCCGcGAcguuCGCCGCGGUCg -3'
miRNA:   3'- -CGCUUU-CG-CGGGC-CUc---GCGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 109529 0.73 0.319849
Target:  5'- aGCGAGcucGGgaGCCgGGGgagguGCGCCugGGCCa -3'
miRNA:   3'- -CGCUU---UCg-CGGgCCU-----CGCGGugCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.