miRNA display CGI


Results 41 - 60 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5550 3' -60.8 NC_001806.1 + 70228 0.66 0.712617
Target:  5'- cGUGAucuccagGGGUGCCgucGAGCaGCUGCGGCCc -3'
miRNA:   3'- -CGCU-------UUCGCGGgc-CUCG-CGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 101092 0.66 0.712617
Target:  5'- gGCGAucAGCcccacaaaaaacgGCCCGcGGGggucguCGaCCACGGCCa -3'
miRNA:   3'- -CGCUu-UCG-------------CGGGC-CUC------GC-GGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 41611 0.66 0.712617
Target:  5'- cGCGAu--CGCCgGGGGUgugggGCCcugcuguuccgugGCGGCCa -3'
miRNA:   3'- -CGCUuucGCGGgCCUCG-----CGG-------------UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 91344 0.66 0.703967
Target:  5'- -----cGUGCCCGGGacccaCGUgGCGGCCa -3'
miRNA:   3'- cgcuuuCGCGGGCCUc----GCGgUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 76221 0.66 0.703967
Target:  5'- cGCGAu--CGCCUGGA-CGCCcuccgGGCCg -3'
miRNA:   3'- -CGCUuucGCGGGCCUcGCGGug---CCGG- -5'
5550 3' -60.8 NC_001806.1 + 47685 0.66 0.703967
Target:  5'- cGCGccAGCGUCCGGcAGCugcaccGCCA-GGCg -3'
miRNA:   3'- -CGCuuUCGCGGGCC-UCG------CGGUgCCGg -5'
5550 3' -60.8 NC_001806.1 + 26702 0.66 0.703967
Target:  5'- gGCGu--GgGCCCGGGGgGCgG-GGCUg -3'
miRNA:   3'- -CGCuuuCgCGGGCCUCgCGgUgCCGG- -5'
5550 3' -60.8 NC_001806.1 + 2813 0.66 0.703967
Target:  5'- gGCGggGGCGggcucgggcCCCgGGGGCGUggaggggggCGCGGgCg -3'
miRNA:   3'- -CGCuuUCGC---------GGG-CCUCGCG---------GUGCCgG- -5'
5550 3' -60.8 NC_001806.1 + 135052 0.66 0.703967
Target:  5'- cGCGAucuGGaccgGCCCcgcggGGAcGCGCCG-GGCCg -3'
miRNA:   3'- -CGCUu--UCg---CGGG-----CCU-CGCGGUgCCGG- -5'
5550 3' -60.8 NC_001806.1 + 127899 0.66 0.703967
Target:  5'- gGCGcgGGUGCagCGGAGC---ACGGCCa -3'
miRNA:   3'- -CGCuuUCGCGg-GCCUCGcggUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 142111 0.66 0.703967
Target:  5'- --aGAGGCGCCgGGAGUgggGUCGuCGGCg -3'
miRNA:   3'- cgcUUUCGCGGgCCUCG---CGGU-GCCGg -5'
5550 3' -60.8 NC_001806.1 + 120865 0.66 0.703967
Target:  5'- gGCGGccccuGGCGCcgccuggucccCCGGGGaccuuGCCcCGGCCg -3'
miRNA:   3'- -CGCUu----UCGCG-----------GGCCUCg----CGGuGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 113052 0.66 0.703967
Target:  5'- cGCGAccccgucgAAGcCGCCaauccguaCGGGGCGUacgugGCGGCCc -3'
miRNA:   3'- -CGCU--------UUC-GCGG--------GCCUCGCGg----UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 141392 0.66 0.703967
Target:  5'- gGCGugugugccccAGAGCauaaacaccaGgCCGGGGCgGCgCGCGGCCa -3'
miRNA:   3'- -CGC----------UUUCG----------CgGGCCUCG-CG-GUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 94151 0.66 0.703003
Target:  5'- aGCuGAAcGCGCUucaggugCGG-GCGCUGCGGCg -3'
miRNA:   3'- -CG-CUUuCGCGG-------GCCuCGCGGUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 136338 0.66 0.703003
Target:  5'- uCGAAggccAGCGCcagcucaaaaaacCCGGGGCcggcgcgcuCCGCGGCCu -3'
miRNA:   3'- cGCUU----UCGCG-------------GGCCUCGc--------GGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 27827 0.66 0.698175
Target:  5'- uUGggGGCGCCgGGuugguccccggggacGGgGCCGCcccgcggugGGCCu -3'
miRNA:   3'- cGCuuUCGCGGgCC---------------UCgCGGUG---------CCGG- -5'
5550 3' -60.8 NC_001806.1 + 41400 0.66 0.694303
Target:  5'- cGCGGAuGCGaUCCGuGAGcCGCCugcccaGCGcGCCg -3'
miRNA:   3'- -CGCUUuCGC-GGGC-CUC-GCGG------UGC-CGG- -5'
5550 3' -60.8 NC_001806.1 + 139332 0.66 0.694303
Target:  5'- aGCGAGuuuGUcgaGUCCauugacucuacGGAGCugGCCAUGGCCa -3'
miRNA:   3'- -CGCUUu--CG---CGGG-----------CCUCG--CGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 132686 0.66 0.694303
Target:  5'- cUGggGGCcugGCCCGcgguGGGgGCCAgGGUCg -3'
miRNA:   3'- cGCuuUCG---CGGGC----CUCgCGGUgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.