miRNA display CGI


Results 61 - 80 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5550 3' -60.8 NC_001806.1 + 65444 0.66 0.694303
Target:  5'- -aGGGAGCG---GGGGaUGCCGCGGCCc -3'
miRNA:   3'- cgCUUUCGCgggCCUC-GCGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 26834 0.66 0.694303
Target:  5'- gGgGAGGGgGCgCCGGAGCcccCCGCGaCCc -3'
miRNA:   3'- -CgCUUUCgCG-GGCCUCGc--GGUGCcGG- -5'
5550 3' -60.8 NC_001806.1 + 139332 0.66 0.694303
Target:  5'- aGCGAGuuuGUcgaGUCCauugacucuacGGAGCugGCCAUGGCCa -3'
miRNA:   3'- -CGCUUu--CG---CGGG-----------CCUCG--CGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 41400 0.66 0.694303
Target:  5'- cGCGGAuGCGaUCCGuGAGcCGCCugcccaGCGcGCCg -3'
miRNA:   3'- -CGCUUuCGC-GGGC-CUC-GCGG------UGC-CGG- -5'
5550 3' -60.8 NC_001806.1 + 78688 0.66 0.694303
Target:  5'- cUGGgcGCGCCCGucgucguGGCGCuccgcaacacCACGGCCu -3'
miRNA:   3'- cGCUuuCGCGGGCc------UCGCG----------GUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 138734 0.66 0.694303
Target:  5'- gGCGGAGauucugucucuGCGCCCcaaaucuucgGGGGUGCCGacgcaGGCg -3'
miRNA:   3'- -CGCUUU-----------CGCGGG----------CCUCGCGGUg----CCGg -5'
5550 3' -60.8 NC_001806.1 + 140685 0.66 0.693334
Target:  5'- uGCGc-GGCGCCCGc-GUGCCGCGcuggaacGCCc -3'
miRNA:   3'- -CGCuuUCGCGGGCcuCGCGGUGC-------CGG- -5'
5550 3' -60.8 NC_001806.1 + 74560 0.66 0.689453
Target:  5'- cGCGGccuuuguuccuGCGCCCGGcGCGUCgcccuaccccgacgACGGCg -3'
miRNA:   3'- -CGCUuu---------CGCGGGCCuCGCGG--------------UGCCGg -5'
5550 3' -60.8 NC_001806.1 + 37631 0.67 0.687509
Target:  5'- gGCGGGaaacGGCuGCCCcccaaagGGGucgugcaugaccuguGCGCUGCGGCCa -3'
miRNA:   3'- -CGCUU----UCG-CGGG-------CCU---------------CGCGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 112140 0.67 0.684591
Target:  5'- --cGGGGCGUuuG-AGCGCggCACGGCCg -3'
miRNA:   3'- cgcUUUCGCGggCcUCGCG--GUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 151764 0.67 0.684591
Target:  5'- -gGggGGgGCCCGuuuucGGCGUC-UGGCCg -3'
miRNA:   3'- cgCuuUCgCGGGCc----UCGCGGuGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 20712 0.67 0.684591
Target:  5'- uCGggGuGgGCCCgccgggggggcGGGGgGCCGgCGGCCu -3'
miRNA:   3'- cGCuuU-CgCGGG-----------CCUCgCGGU-GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 54 0.67 0.684591
Target:  5'- -gGggGGgGCCCGuuuucGGCGUC-UGGCCg -3'
miRNA:   3'- cgCuuUCgCGGGCc----UCGCGGuGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 72322 0.67 0.683618
Target:  5'- cGCGAu--CGCCCGGAcGUacggugggcgggaGCCAUGGUg -3'
miRNA:   3'- -CGCUuucGCGGGCCU-CG-------------CGGUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 145165 0.67 0.683618
Target:  5'- uCGAGGGCGcCCCGGugucguucaacaaAGaCGCCGCGuuuCCa -3'
miRNA:   3'- cGCUUUCGC-GGGCC-------------UC-GCGGUGCc--GG- -5'
5550 3' -60.8 NC_001806.1 + 52117 0.67 0.681669
Target:  5'- aGUGcauGGCGCUCaGGGCGgcggucagcgacguCCugGGCCa -3'
miRNA:   3'- -CGCuu-UCGCGGGcCUCGC--------------GGugCCGG- -5'
5550 3' -60.8 NC_001806.1 + 152081 0.67 0.674839
Target:  5'- cGCGcgcGCGCCCgcGGGGgGCC-CGGgCu -3'
miRNA:   3'- -CGCuuuCGCGGG--CCUCgCGGuGCCgG- -5'
5550 3' -60.8 NC_001806.1 + 38540 0.67 0.674839
Target:  5'- gGUGguGGCGCaCCGGuagcgAGCGaCCG-GGCCc -3'
miRNA:   3'- -CGCuuUCGCG-GGCC-----UCGC-GGUgCCGG- -5'
5550 3' -60.8 NC_001806.1 + 27052 0.67 0.674839
Target:  5'- -gGGccGUGCCUGGGGC-CCGaGGCCc -3'
miRNA:   3'- cgCUuuCGCGGGCCUCGcGGUgCCGG- -5'
5550 3' -60.8 NC_001806.1 + 2421 0.67 0.674839
Target:  5'- aGCGGgcccgAGGCGCgCaGGGgGCCaaagagGCGGCCc -3'
miRNA:   3'- -CGCU-----UUCGCGgGcCUCgCGG------UGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.