miRNA display CGI


Results 41 - 60 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5550 3' -60.8 NC_001806.1 + 134872 0.66 0.723119
Target:  5'- gGCGGAgcAGCGUCUGcuGGCuaaucGCCuCGGCCg -3'
miRNA:   3'- -CGCUU--UCGCGGGCc-UCG-----CGGuGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 47685 0.66 0.703967
Target:  5'- cGCGccAGCGUCCGGcAGCugcaccGCCA-GGCg -3'
miRNA:   3'- -CGCuuUCGCGGGCC-UCG------CGGUgCCGg -5'
5550 3' -60.8 NC_001806.1 + 26640 0.66 0.694303
Target:  5'- cCGAGccGGCGCCa-GAG-GCC-CGGCCc -3'
miRNA:   3'- cGCUU--UCGCGGgcCUCgCGGuGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 10721 0.66 0.732591
Target:  5'- uCGccAGCGggaCCGGAGCGCgCAUGcacGCCg -3'
miRNA:   3'- cGCuuUCGCg--GGCCUCGCG-GUGC---CGG- -5'
5550 3' -60.8 NC_001806.1 + 41611 0.66 0.712617
Target:  5'- cGCGAu--CGCCgGGGGUgugggGCCcugcuguuccgugGCGGCCa -3'
miRNA:   3'- -CGCUuucGCGGgCCUCG-----CGG-------------UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 74560 0.66 0.689453
Target:  5'- cGCGGccuuuguuccuGCGCCCGGcGCGUCgcccuaccccgacgACGGCg -3'
miRNA:   3'- -CGCUuu---------CGCGGGCCuCGCGG--------------UGCCGg -5'
5550 3' -60.8 NC_001806.1 + 91344 0.66 0.703967
Target:  5'- -----cGUGCCCGGGacccaCGUgGCGGCCa -3'
miRNA:   3'- cgcuuuCGCGGGCCUc----GCGgUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 139332 0.66 0.694303
Target:  5'- aGCGAGuuuGUcgaGUCCauugacucuacGGAGCugGCCAUGGCCa -3'
miRNA:   3'- -CGCUUu--CG---CGGG-----------CCUCG--CGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 29863 0.66 0.741982
Target:  5'- uCGGAcAGCGCCCcccucGGCGCCcauCgGGCCa -3'
miRNA:   3'- cGCUU-UCGCGGGcc---UCGCGGu--G-CCGG- -5'
5550 3' -60.8 NC_001806.1 + 91012 0.66 0.732591
Target:  5'- cGCGAcGGCGgCgGcaaGGGCGCgGCGGgCg -3'
miRNA:   3'- -CGCUuUCGCgGgC---CUCGCGgUGCCgG- -5'
5550 3' -60.8 NC_001806.1 + 127899 0.66 0.703967
Target:  5'- gGCGcgGGUGCagCGGAGC---ACGGCCa -3'
miRNA:   3'- -CGCuuUCGCGg-GCCUCGcggUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 136338 0.66 0.703003
Target:  5'- uCGAAggccAGCGCcagcucaaaaaacCCGGGGCcggcgcgcuCCGCGGCCu -3'
miRNA:   3'- cGCUU----UCGCG-------------GGCCUCGc--------GGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 92304 0.66 0.729757
Target:  5'- aCGGucGCGCUcuCGGAgggggcggcuaucuGCGCCcccagccuaACGGCCg -3'
miRNA:   3'- cGCUuuCGCGG--GCCU--------------CGCGG---------UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 41400 0.66 0.694303
Target:  5'- cGCGGAuGCGaUCCGuGAGcCGCCugcccaGCGcGCCg -3'
miRNA:   3'- -CGCUUuCGC-GGGC-CUC-GCGG------UGC-CGG- -5'
5550 3' -60.8 NC_001806.1 + 129709 0.66 0.713575
Target:  5'- --cGGAG-GCCCGGGGgGCCACGuuCu -3'
miRNA:   3'- cgcUUUCgCGGGCCUCgCGGUGCcgG- -5'
5550 3' -60.8 NC_001806.1 + 132686 0.66 0.694303
Target:  5'- cUGggGGCcugGCCCGcgguGGGgGCCAgGGUCg -3'
miRNA:   3'- cGCuuUCG---CGGGC----CUCgCGGUgCCGG- -5'
5550 3' -60.8 NC_001806.1 + 72553 0.66 0.741982
Target:  5'- gGgGuAGGGgGCCCGGGGCcacacccgcCCACaGCCg -3'
miRNA:   3'- -CgC-UUUCgCGGGCCUCGc--------GGUGcCGG- -5'
5550 3' -60.8 NC_001806.1 + 113052 0.66 0.703967
Target:  5'- cGCGAccccgucgAAGcCGCCaauccguaCGGGGCGUacgugGCGGCCc -3'
miRNA:   3'- -CGCU--------UUC-GCGG--------GCCUCGCGg----UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 76377 0.66 0.732591
Target:  5'- aGCGAGGacGCGCUggUGGcguGCGUgGCGGCg -3'
miRNA:   3'- -CGCUUU--CGCGG--GCCu--CGCGgUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 78688 0.66 0.694303
Target:  5'- cUGGgcGCGCCCGucgucguGGCGCuccgcaacacCACGGCCu -3'
miRNA:   3'- cGCUuuCGCGGGCc------UCGCG----------GUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.