miRNA display CGI


Results 41 - 60 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5550 3' -60.8 NC_001806.1 + 91012 0.66 0.732591
Target:  5'- cGCGAcGGCGgCgGcaaGGGCGCgGCGGgCg -3'
miRNA:   3'- -CGCUuUCGCgGgC---CUCGCGgUGCCgG- -5'
5550 3' -60.8 NC_001806.1 + 150653 0.66 0.741047
Target:  5'- gGCGGAcgcugguuggccgGGC-CCCGccGCGCUgGCGGCCg -3'
miRNA:   3'- -CGCUU-------------UCGcGGGCcuCGCGG-UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 91344 0.66 0.703967
Target:  5'- -----cGUGCCCGGGacccaCGUgGCGGCCa -3'
miRNA:   3'- cgcuuuCGCGGGCCUc----GCGgUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 2813 0.66 0.703967
Target:  5'- gGCGggGGCGggcucgggcCCCgGGGGCGUggaggggggCGCGGgCg -3'
miRNA:   3'- -CGCuuUCGC---------GGG-CCUCGCG---------GUGCCgG- -5'
5550 3' -60.8 NC_001806.1 + 77847 0.66 0.732591
Target:  5'- gGCGAGauggGGgGCCUcgauGGA-UGCgGCGGCCg -3'
miRNA:   3'- -CGCUU----UCgCGGG----CCUcGCGgUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 74560 0.66 0.689453
Target:  5'- cGCGGccuuuguuccuGCGCCCGGcGCGUCgcccuaccccgacgACGGCg -3'
miRNA:   3'- -CGCUuu---------CGCGGGCCuCGCGG--------------UGCCGg -5'
5550 3' -60.8 NC_001806.1 + 94939 0.66 0.713575
Target:  5'- uGCGAuucuggcucGCGUCCGGcgaccGCGCC--GGCCa -3'
miRNA:   3'- -CGCUuu-------CGCGGGCCu----CGCGGugCCGG- -5'
5550 3' -60.8 NC_001806.1 + 26834 0.66 0.694303
Target:  5'- gGgGAGGGgGCgCCGGAGCcccCCGCGaCCc -3'
miRNA:   3'- -CgCUUUCgCG-GGCCUCGc--GGUGCcGG- -5'
5550 3' -60.8 NC_001806.1 + 69416 0.66 0.732591
Target:  5'- gGCGGcGGGCGUCCccgcgcGGA-CGCCcacCGGCCa -3'
miRNA:   3'- -CGCU-UUCGCGGG------CCUcGCGGu--GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 141392 0.66 0.703967
Target:  5'- gGCGugugugccccAGAGCauaaacaccaGgCCGGGGCgGCgCGCGGCCa -3'
miRNA:   3'- -CGC----------UUUCG----------CgGGCCUCG-CG-GUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 8671 0.66 0.745714
Target:  5'- aGCG-GAGCaGCCacaucaGGAGCGCCccaAauccgcccgacagaaCGGCCa -3'
miRNA:   3'- -CGCuUUCG-CGGg-----CCUCGCGG---U---------------GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 65444 0.66 0.694303
Target:  5'- -aGGGAGCG---GGGGaUGCCGCGGCCc -3'
miRNA:   3'- cgCUUUCGCgggCCUC-GCGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 134872 0.66 0.723119
Target:  5'- gGCGGAgcAGCGUCUGcuGGCuaaucGCCuCGGCCg -3'
miRNA:   3'- -CGCUU--UCGCGGGCc-UCG-----CGGuGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 41400 0.66 0.694303
Target:  5'- cGCGGAuGCGaUCCGuGAGcCGCCugcccaGCGcGCCg -3'
miRNA:   3'- -CGCUUuCGC-GGGC-CUC-GCGG------UGC-CGG- -5'
5550 3' -60.8 NC_001806.1 + 92304 0.66 0.729757
Target:  5'- aCGGucGCGCUcuCGGAgggggcggcuaucuGCGCCcccagccuaACGGCCg -3'
miRNA:   3'- cGCUuuCGCGG--GCCU--------------CGCGG---------UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 28124 0.66 0.713575
Target:  5'- aUGGAGccccGC-CCCGGAGCGaguacCCGcCGGCCu -3'
miRNA:   3'- cGCUUU----CGcGGGCCUCGC-----GGU-GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 27827 0.66 0.698175
Target:  5'- uUGggGGCGCCgGGuugguccccggggacGGgGCCGCcccgcggugGGCCu -3'
miRNA:   3'- cGCuuUCGCGGgCC---------------UCgCGGUG---------CCGG- -5'
5550 3' -60.8 NC_001806.1 + 10721 0.66 0.732591
Target:  5'- uCGccAGCGggaCCGGAGCGCgCAUGcacGCCg -3'
miRNA:   3'- cGCuuUCGCg--GGCCUCGCG-GUGC---CGG- -5'
5550 3' -60.8 NC_001806.1 + 72553 0.66 0.741982
Target:  5'- gGgGuAGGGgGCCCGGGGCcacacccgcCCACaGCCg -3'
miRNA:   3'- -CgC-UUUCgCGGGCCUCGc--------GGUGcCGG- -5'
5550 3' -60.8 NC_001806.1 + 26702 0.66 0.703967
Target:  5'- gGCGu--GgGCCCGGGGgGCgG-GGCUg -3'
miRNA:   3'- -CGCuuuCgCGGGCCUCgCGgUgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.