miRNA display CGI


Results 41 - 60 of 384 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5550 3' -60.8 NC_001806.1 + 4743 0.66 0.713575
Target:  5'- cCGGGccGGgGCCCGGu-CGCCGgCGGCg -3'
miRNA:   3'- cGCUU--UCgCGGGCCucGCGGU-GCCGg -5'
5550 3' -60.8 NC_001806.1 + 4818 0.71 0.446382
Target:  5'- gGCG--GGgGUCCGGGGCGgCGaGGCCg -3'
miRNA:   3'- -CGCuuUCgCGGGCCUCGCgGUgCCGG- -5'
5550 3' -60.8 NC_001806.1 + 4842 0.68 0.596285
Target:  5'- cGCGGggucGGGCGUCgGGAuCGUCcggACGGCCu -3'
miRNA:   3'- -CGCU----UUCGCGGgCCUcGCGG---UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 5074 0.73 0.356341
Target:  5'- cGCGGucuGgGCUCGGGGUggGCgGCGGCCc -3'
miRNA:   3'- -CGCUuu-CgCGGGCCUCG--CGgUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 5106 0.71 0.437676
Target:  5'- uCGguGGgGCCCGGGGaGCCGgGGCg -3'
miRNA:   3'- cGCuuUCgCGGGCCUCgCGGUgCCGg -5'
5550 3' -60.8 NC_001806.1 + 5356 0.67 0.673862
Target:  5'- cGCGuaucGGCGuCCCGGcgcggcgAGCGUCugACGGUCu -3'
miRNA:   3'- -CGCuu--UCGC-GGGCC-------UCGCGG--UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 5496 0.66 0.741982
Target:  5'- cGgGAAGGaggaGCagCGGAG-GCCGcCGGCCc -3'
miRNA:   3'- -CgCUUUCg---CGg-GCCUCgCGGU-GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 5586 0.7 0.482135
Target:  5'- aCGccGGCacGCCgGGGGCccgugGCCGCGGCCc -3'
miRNA:   3'- cGCuuUCG--CGGgCCUCG-----CGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 6134 0.68 0.576755
Target:  5'- cGCGAccGaCGCCCGcagacGGCGCC--GGCCa -3'
miRNA:   3'- -CGCUuuC-GCGGGCc----UCGCGGugCCGG- -5'
5550 3' -60.8 NC_001806.1 + 8671 0.66 0.745714
Target:  5'- aGCG-GAGCaGCCacaucaGGAGCGCCccaAauccgcccgacagaaCGGCCa -3'
miRNA:   3'- -CGCuUUCG-CGGg-----CCUCGCGG---U---------------GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 9091 0.73 0.319849
Target:  5'- cCGGAAGCccCCCGGAGCcaCCgaGCGGCCa -3'
miRNA:   3'- cGCUUUCGc-GGGCCUCGc-GG--UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 9140 0.72 0.394848
Target:  5'- -aGggGGCgucgacaGCCUGGAGgGCCaucggggagacaACGGCCg -3'
miRNA:   3'- cgCuuUCG-------CGGGCCUCgCGG------------UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 9859 0.67 0.674839
Target:  5'- -----cGCGuUCCGGuacuGCGCCGCGGUg -3'
miRNA:   3'- cgcuuuCGC-GGGCCu---CGCGGUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 10721 0.66 0.732591
Target:  5'- uCGccAGCGggaCCGGAGCGCgCAUGcacGCCg -3'
miRNA:   3'- cGCuuUCGCg--GGCCUCGCG-GUGC---CGG- -5'
5550 3' -60.8 NC_001806.1 + 11438 0.7 0.494974
Target:  5'- gGgGggGGUGCUCGGAugcgauuugaGCucggcuccgaggcggGCCAUGGCCg -3'
miRNA:   3'- -CgCuuUCGCGGGCCU----------CG---------------CGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 15168 0.67 0.665055
Target:  5'- cGgGAAGGCuggGCCCGGggacugggguagGGUGUCACGGgucCCa -3'
miRNA:   3'- -CgCUUUCG---CGGGCC------------UCGCGGUGCC---GG- -5'
5550 3' -60.8 NC_001806.1 + 19353 0.69 0.557372
Target:  5'- ---cAAGCcUCCGGGGgGCCcuACGGCCa -3'
miRNA:   3'- cgcuUUCGcGGGCCUCgCGG--UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 19568 0.7 0.482135
Target:  5'- gGCGcaAAAGCGCCUGGGGaaaUguCGGCCa -3'
miRNA:   3'- -CGC--UUUCGCGGGCCUCgc-GguGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 20396 0.71 0.437676
Target:  5'- gGCG--GGCGggaCCGGGGgGCCcggggACGGCCa -3'
miRNA:   3'- -CGCuuUCGCg--GGCCUCgCGG-----UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 20615 0.76 0.217004
Target:  5'- cGCGGAugggcGGgGCCgGGGGUucgaccaacggGCCGCGGCCa -3'
miRNA:   3'- -CGCUU-----UCgCGGgCCUCG-----------CGGUGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.