miRNA display CGI


Results 41 - 60 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5550 3' -60.8 NC_001806.1 + 23131 0.79 0.147401
Target:  5'- cGCGGGAcccGCGCCUGccGAGCuCCGCGGCCg -3'
miRNA:   3'- -CGCUUU---CGCGGGC--CUCGcGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 147696 0.79 0.148862
Target:  5'- cGCGggGGCGggcCCCGGAggcgGCgcucgcacgcacgggGCCACGGCCg -3'
miRNA:   3'- -CGCuuUCGC---GGGCCU----CG---------------CGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 24627 0.78 0.162615
Target:  5'- cGCGcuGGgGCCUGGGcGCGCCgcuGCGGCCc -3'
miRNA:   3'- -CGCuuUCgCGGGCCU-CGCGG---UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 4377 0.78 0.170741
Target:  5'- cGCGggGGUccucgccgccGCCCGGGGCuugGgCGCGGCCu -3'
miRNA:   3'- -CGCuuUCG----------CGGGCCUCG---CgGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 126477 0.78 0.174938
Target:  5'- uGCGAuacuucGCGCCCGGGcGCGuCCcCGGCCc -3'
miRNA:   3'- -CGCUuu----CGCGGGCCU-CGC-GGuGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 30866 0.77 0.177931
Target:  5'- cGCGggGGCcgaggaaguguGCCCGGAagacGCGCCACgcggagacuuccggGGCCg -3'
miRNA:   3'- -CGCuuUCG-----------CGGGCCU----CGCGGUG--------------CCGG- -5'
5550 3' -60.8 NC_001806.1 + 140030 1.13 0.000612
Target:  5'- gGCGAAAGCGCCCGGAGCGCCACGGCCg -3'
miRNA:   3'- -CGCUUUCGCGGGCCUCGCGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 46419 0.77 0.192658
Target:  5'- cGCGucuucuGCGCCgCGGucgGGCGCCugGCGGCCa -3'
miRNA:   3'- -CGCuuu---CGCGG-GCC---UCGCGG--UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 1670 0.77 0.192658
Target:  5'- cGCaGAAguccGGCGCgCCGG-GCGCCAUGGCg -3'
miRNA:   3'- -CG-CUU----UCGCG-GGCCuCGCGGUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 131963 0.76 0.206964
Target:  5'- uGCGuccuGGCgGCCCuGGAGCGCCAgaccgGGCCg -3'
miRNA:   3'- -CGCuu--UCG-CGGG-CCUCGCGGUg----CCGG- -5'
5550 3' -60.8 NC_001806.1 + 92924 0.76 0.211933
Target:  5'- gGCGggGcGgGCCUGGAG-GCCGgGGCCc -3'
miRNA:   3'- -CGCuuU-CgCGGGCCUCgCGGUgCCGG- -5'
5550 3' -60.8 NC_001806.1 + 90538 0.76 0.211933
Target:  5'- gGgGGAGGCGCUgUGuGAGCGCCuCGGCCu -3'
miRNA:   3'- -CgCUUUCGCGG-GC-CUCGCGGuGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 20615 0.76 0.217004
Target:  5'- cGCGGAugggcGGgGCCgGGGGUucgaccaacggGCCGCGGCCa -3'
miRNA:   3'- -CGCUU-----UCgCGGgCCUCG-----------CGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 77105 0.76 0.217004
Target:  5'- gGCGuccuGGGCGCCaaGAGCGCCGagcgGGCCg -3'
miRNA:   3'- -CGCu---UUCGCGGgcCUCGCGGUg---CCGG- -5'
5550 3' -60.8 NC_001806.1 + 147746 0.76 0.217004
Target:  5'- cGCGggGGCGCgCGGGuccCGaCGCGGCCg -3'
miRNA:   3'- -CGCuuUCGCGgGCCUc--GCgGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 26255 0.75 0.238334
Target:  5'- gGCGGcGGGCaGCCCGG-GCcccCCGCGGCCg -3'
miRNA:   3'- -CGCU-UUCG-CGGGCCuCGc--GGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 50653 0.75 0.238334
Target:  5'- uGCGGGgacgcgcaccGGCGCCgGGAcGaCGCgGCGGCCa -3'
miRNA:   3'- -CGCUU----------UCGCGGgCCU-C-GCGgUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 151530 0.75 0.238334
Target:  5'- uGgGAcGGCGCCCGuGGGC-CCggGCGGCCg -3'
miRNA:   3'- -CgCUuUCGCGGGC-CUCGcGG--UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 84098 0.75 0.238334
Target:  5'- cGCG-GAG-GCCCGucGCGCCACGGUCc -3'
miRNA:   3'- -CGCuUUCgCGGGCcuCGCGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 81670 0.75 0.251957
Target:  5'- gGCGAAGGCGUCCGGAacgcacuggcgauuaGgGCgGCGGUg -3'
miRNA:   3'- -CGCUUUCGCGGGCCU---------------CgCGgUGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.