miRNA display CGI


Results 21 - 40 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5550 3' -60.8 NC_001806.1 + 21387 0.66 0.721216
Target:  5'- -aGGAGGcCGUCCGGAcgaucccGaCGCCcgaccccGCGGCCu -3'
miRNA:   3'- cgCUUUC-GCGGGCCU-------C-GCGG-------UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 26702 0.66 0.703967
Target:  5'- gGCGu--GgGCCCGGGGgGCgG-GGCUg -3'
miRNA:   3'- -CGCuuuCgCGGGCCUCgCGgUgCCGG- -5'
5550 3' -60.8 NC_001806.1 + 139332 0.66 0.694303
Target:  5'- aGCGAGuuuGUcgaGUCCauugacucuacGGAGCugGCCAUGGCCa -3'
miRNA:   3'- -CGCUUu--CG---CGGG-----------CCUCG--CGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 41611 0.66 0.712617
Target:  5'- cGCGAu--CGCCgGGGGUgugggGCCcugcuguuccgugGCGGCCa -3'
miRNA:   3'- -CGCUuucGCGGgCCUCG-----CGG-------------UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 26640 0.66 0.694303
Target:  5'- cCGAGccGGCGCCa-GAG-GCC-CGGCCc -3'
miRNA:   3'- cGCUU--UCGCGGgcCUCgCGGuGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 41400 0.66 0.694303
Target:  5'- cGCGGAuGCGaUCCGuGAGcCGCCugcccaGCGcGCCg -3'
miRNA:   3'- -CGCUUuCGC-GGGC-CUC-GCGG------UGC-CGG- -5'
5550 3' -60.8 NC_001806.1 + 4263 0.66 0.722168
Target:  5'- cGCGucGGCGUccagcucgacccgCCGGGGCuGCC-CGGCn -3'
miRNA:   3'- -CGCuuUCGCG-------------GGCCUCG-CGGuGCCGg -5'
5550 3' -60.8 NC_001806.1 + 146841 0.66 0.713575
Target:  5'- uGCGgcGGCuccagCCGGGGa-CCGCGGCCc -3'
miRNA:   3'- -CGCuuUCGcg---GGCCUCgcGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 141392 0.66 0.703967
Target:  5'- gGCGugugugccccAGAGCauaaacaccaGgCCGGGGCgGCgCGCGGCCa -3'
miRNA:   3'- -CGC----------UUUCG----------CgGGCCUCG-CG-GUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 4743 0.66 0.713575
Target:  5'- cCGGGccGGgGCCCGGu-CGCCGgCGGCg -3'
miRNA:   3'- cGCUU--UCgCGGGCCucGCGGU-GCCGg -5'
5550 3' -60.8 NC_001806.1 + 91344 0.66 0.703967
Target:  5'- -----cGUGCCCGGGacccaCGUgGCGGCCa -3'
miRNA:   3'- cgcuuuCGCGGGCCUc----GCGgUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 125494 0.66 0.723119
Target:  5'- aCGaAAAGC-CCCGGGccGCGUCGcCGGCa -3'
miRNA:   3'- cGC-UUUCGcGGGCCU--CGCGGU-GCCGg -5'
5550 3' -60.8 NC_001806.1 + 74770 0.66 0.723119
Target:  5'- gGCGAAGGUgGCCCGcGA-CGCC-CGGg- -3'
miRNA:   3'- -CGCUUUCG-CGGGC-CUcGCGGuGCCgg -5'
5550 3' -60.8 NC_001806.1 + 140685 0.66 0.693334
Target:  5'- uGCGc-GGCGCCCGc-GUGCCGCGcuggaacGCCc -3'
miRNA:   3'- -CGCuuUCGCGGGCcuCGCGGUGC-------CGG- -5'
5550 3' -60.8 NC_001806.1 + 94151 0.66 0.703003
Target:  5'- aGCuGAAcGCGCUucaggugCGG-GCGCUGCGGCg -3'
miRNA:   3'- -CG-CUUuCGCGG-------GCCuCGCGGUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 132686 0.66 0.694303
Target:  5'- cUGggGGCcugGCCCGcgguGGGgGCCAgGGUCg -3'
miRNA:   3'- cGCuuUCG---CGGGC----CUCgCGGUgCCGG- -5'
5550 3' -60.8 NC_001806.1 + 65444 0.66 0.694303
Target:  5'- -aGGGAGCG---GGGGaUGCCGCGGCCc -3'
miRNA:   3'- cgCUUUCGCgggCCUC-GCGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 28124 0.66 0.713575
Target:  5'- aUGGAGccccGC-CCCGGAGCGaguacCCGcCGGCCu -3'
miRNA:   3'- cGCUUU----CGcGGGCCUCGC-----GGU-GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 74560 0.66 0.689453
Target:  5'- cGCGGccuuuguuccuGCGCCCGGcGCGUCgcccuaccccgacgACGGCg -3'
miRNA:   3'- -CGCUuu---------CGCGGGCCuCGCGG--------------UGCCGg -5'
5550 3' -60.8 NC_001806.1 + 27827 0.66 0.698175
Target:  5'- uUGggGGCGCCgGGuugguccccggggacGGgGCCGCcccgcggugGGCCu -3'
miRNA:   3'- cGCuuUCGCGGgCC---------------UCgCGGUG---------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.