miRNA display CGI


Results 21 - 40 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5550 3' -60.8 NC_001806.1 + 69416 0.66 0.732591
Target:  5'- gGCGGcGGGCGUCCccgcgcGGA-CGCCcacCGGCCa -3'
miRNA:   3'- -CGCU-UUCGCGGG------CCUcGCGGu--GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 77847 0.66 0.732591
Target:  5'- gGCGAGauggGGgGCCUcgauGGA-UGCgGCGGCCg -3'
miRNA:   3'- -CGCUU----UCgCGGG----CCUcGCGgUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 66562 0.66 0.732591
Target:  5'- uCGGuuuGGgGCCgGGGGCGUCAUGuCCu -3'
miRNA:   3'- cGCUu--UCgCGGgCCUCGCGGUGCcGG- -5'
5550 3' -60.8 NC_001806.1 + 91012 0.66 0.732591
Target:  5'- cGCGAcGGCGgCgGcaaGGGCGCgGCGGgCg -3'
miRNA:   3'- -CGCUuUCGCgGgC---CUCGCGgUGCCgG- -5'
5550 3' -60.8 NC_001806.1 + 92304 0.66 0.729757
Target:  5'- aCGGucGCGCUcuCGGAgggggcggcuaucuGCGCCcccagccuaACGGCCg -3'
miRNA:   3'- cGCUuuCGCGG--GCCU--------------CGCGG---------UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 125494 0.66 0.723119
Target:  5'- aCGaAAAGC-CCCGGGccGCGUCGcCGGCa -3'
miRNA:   3'- cGC-UUUCGcGGGCCU--CGCGGU-GCCGg -5'
5550 3' -60.8 NC_001806.1 + 134872 0.66 0.723119
Target:  5'- gGCGGAgcAGCGUCUGcuGGCuaaucGCCuCGGCCg -3'
miRNA:   3'- -CGCUU--UCGCGGGCc-UCG-----CGGuGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 74770 0.66 0.723119
Target:  5'- gGCGAAGGUgGCCCGcGA-CGCC-CGGg- -3'
miRNA:   3'- -CGCUUUCG-CGGGC-CUcGCGGuGCCgg -5'
5550 3' -60.8 NC_001806.1 + 86791 0.66 0.723119
Target:  5'- uCGAAGGcCGCCCaGcGCGCguggacguacuCGCGGUCg -3'
miRNA:   3'- cGCUUUC-GCGGGcCuCGCG-----------GUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 147648 0.66 0.723119
Target:  5'- gGCGc--GCGuCCgCGGGGCGg-GCGGCCg -3'
miRNA:   3'- -CGCuuuCGC-GG-GCCUCGCggUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 97352 0.66 0.723119
Target:  5'- cGCGAccucaccaccAAG-GCCCGG---GCCACGGCg -3'
miRNA:   3'- -CGCU----------UUCgCGGGCCucgCGGUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 4263 0.66 0.722168
Target:  5'- cGCGucGGCGUccagcucgacccgCCGGGGCuGCC-CGGCn -3'
miRNA:   3'- -CGCuuUCGCG-------------GGCCUCG-CGGuGCCGg -5'
5550 3' -60.8 NC_001806.1 + 21387 0.66 0.721216
Target:  5'- -aGGAGGcCGUCCGGAcgaucccGaCGCCcgaccccGCGGCCu -3'
miRNA:   3'- cgCUUUC-GCGGGCCU-------C-GCGG-------UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 121122 0.66 0.717401
Target:  5'- uGCGAgauuuuucuguaucuGAcGCGCCCcaaGGCGCUGCGGUUg -3'
miRNA:   3'- -CGCU---------------UU-CGCGGGcc-UCGCGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 28124 0.66 0.713575
Target:  5'- aUGGAGccccGC-CCCGGAGCGaguacCCGcCGGCCu -3'
miRNA:   3'- cGCUUU----CGcGGGCCUCGC-----GGU-GCCGG- -5'
5550 3' -60.8 NC_001806.1 + 4743 0.66 0.713575
Target:  5'- cCGGGccGGgGCCCGGu-CGCCGgCGGCg -3'
miRNA:   3'- cGCUU--UCgCGGGCCucGCGGU-GCCGg -5'
5550 3' -60.8 NC_001806.1 + 129709 0.66 0.713575
Target:  5'- --cGGAG-GCCCGGGGgGCCACGuuCu -3'
miRNA:   3'- cgcUUUCgCGGGCCUCgCGGUGCcgG- -5'
5550 3' -60.8 NC_001806.1 + 146841 0.66 0.713575
Target:  5'- uGCGgcGGCuccagCCGGGGa-CCGCGGCCc -3'
miRNA:   3'- -CGCuuUCGcg---GGCCUCgcGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 24948 0.66 0.713575
Target:  5'- -gGGAGGCGCCUGGgacgaAGaCGaCgGCGGCg -3'
miRNA:   3'- cgCUUUCGCGGGCC-----UC-GC-GgUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 94939 0.66 0.713575
Target:  5'- uGCGAuucuggcucGCGUCCGGcgaccGCGCC--GGCCa -3'
miRNA:   3'- -CGCUuu-------CGCGGGCCu----CGCGGugCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.