miRNA display CGI


Results 1 - 20 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5550 3' -60.8 NC_001806.1 + 152081 0.67 0.674839
Target:  5'- cGCGcgcGCGCCCgcGGGGgGCC-CGGgCu -3'
miRNA:   3'- -CGCuuuCGCGGG--CCUCgCGGuGCCgG- -5'
5550 3' -60.8 NC_001806.1 + 152043 0.68 0.615912
Target:  5'- cGCGcacGcCGCCCGGAcCGCCGCccGCCu -3'
miRNA:   3'- -CGCuuuC-GCGGGCCUcGCGGUGc-CGG- -5'
5550 3' -60.8 NC_001806.1 + 151764 0.67 0.684591
Target:  5'- -gGggGGgGCCCGuuuucGGCGUC-UGGCCg -3'
miRNA:   3'- cgCuuUCgCGGGCc----UCGCGGuGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 151694 0.71 0.454299
Target:  5'- cCGggGGgGCCCGGGcugccCGCCGCcaccgcuuuaaagGGCCg -3'
miRNA:   3'- cGCuuUCgCGGGCCUc----GCGGUG-------------CCGG- -5'
5550 3' -60.8 NC_001806.1 + 151557 0.68 0.596285
Target:  5'- nCGggGGCGgCgGGGGcCGCgAUGGCg -3'
miRNA:   3'- cGCuuUCGCgGgCCUC-GCGgUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 151530 0.75 0.238334
Target:  5'- uGgGAcGGCGCCCGuGGGC-CCggGCGGCCg -3'
miRNA:   3'- -CgCUuUCGCGGGC-CUCGcGG--UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 151443 0.7 0.482135
Target:  5'- gGCgGggGGCGgCggCGGGGCgGCCGCGGgCg -3'
miRNA:   3'- -CG-CuuUCGCgG--GCCUCG-CGGUGCCgG- -5'
5550 3' -60.8 NC_001806.1 + 151279 0.71 0.437676
Target:  5'- gGUGggGGCcggGgCCGGGGgGCgGCGGCg -3'
miRNA:   3'- -CGCuuUCG---CgGGCCUCgCGgUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 151157 0.68 0.615912
Target:  5'- gGCGcAGGCGCgCCaGGuGCuCCGCGGUg -3'
miRNA:   3'- -CGCuUUCGCG-GG-CCuCGcGGUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 150980 0.67 0.665055
Target:  5'- cGCGGGcccacgaGCCgCGGcGCGCCaggcggGCGGCCg -3'
miRNA:   3'- -CGCUUucg----CGG-GCCuCGCGG------UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 150878 0.69 0.518275
Target:  5'- cGCGGGccAGgGCCCGGGcacGgGCCucgggccccaggcACGGCCc -3'
miRNA:   3'- -CGCUU--UCgCGGGCCU---CgCGG-------------UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 150653 0.66 0.741047
Target:  5'- gGCGGAcgcugguuggccgGGC-CCCGccGCGCUgGCGGCCg -3'
miRNA:   3'- -CGCUU-------------UCGcGGGCcuCGCGG-UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 149772 0.7 0.509834
Target:  5'- -aGAcauGGCGCCCGGccccucaccucGCGCUggggGCGGCCc -3'
miRNA:   3'- cgCUu--UCGCGGGCCu----------CGCGG----UGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 148180 0.75 0.267432
Target:  5'- cGUGggGGgGCgCGGGGCGUC-CGGCg -3'
miRNA:   3'- -CGCuuUCgCGgGCCUCGCGGuGCCGg -5'
5550 3' -60.8 NC_001806.1 + 148134 0.74 0.286231
Target:  5'- uGCGuGAGaCGCCCcgcccgucacggGGGGCGCgGCGGCg -3'
miRNA:   3'- -CGCuUUC-GCGGG------------CCUCGCGgUGCCGg -5'
5550 3' -60.8 NC_001806.1 + 148084 0.73 0.319849
Target:  5'- cCGAuGGGCGCCgaggGGGGCgcuguccgaGCCGCGGCCg -3'
miRNA:   3'- cGCU-UUCGCGGg---CCUCG---------CGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 147979 0.71 0.42056
Target:  5'- cCGGAGGgGCCagacgcccccCGcGGCGCCGCGGCUc -3'
miRNA:   3'- cGCUUUCgCGG----------GCcUCGCGGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 147794 0.73 0.319849
Target:  5'- gGCGggGGgcggaGCCUGGcaugGGCGCCGCggggGGCCu -3'
miRNA:   3'- -CGCuuUCg----CGGGCC----UCGCGGUG----CCGG- -5'
5550 3' -60.8 NC_001806.1 + 147746 0.76 0.217004
Target:  5'- cGCGggGGCGCgCGGGuccCGaCGCGGCCg -3'
miRNA:   3'- -CGCuuUCGCGgGCCUc--GCgGUGCCGG- -5'
5550 3' -60.8 NC_001806.1 + 147696 0.79 0.148862
Target:  5'- cGCGggGGCGggcCCCGGAggcgGCgcucgcacgcacgggGCCACGGCCg -3'
miRNA:   3'- -CGCuuUCGC---GGGCCU----CG---------------CGGUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.