miRNA display CGI


Results 21 - 25 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5550 5' -54.5 NC_001806.1 + 34392 0.69 0.807189
Target:  5'- gGUGGg-UGGGCgGCGGugGCCGg--- -3'
miRNA:   3'- -CACCagACCUGgCGCCugUGGUaaau -5'
5550 5' -54.5 NC_001806.1 + 25426 0.7 0.788864
Target:  5'- gGUGGU--GGugCGCGGGCGCCc---- -3'
miRNA:   3'- -CACCAgaCCugGCGCCUGUGGuaaau -5'
5550 5' -54.5 NC_001806.1 + 52205 0.72 0.669291
Target:  5'- -cGGUacguacgGGACCGUGGAUACCGUc-- -3'
miRNA:   3'- caCCAga-----CCUGGCGCCUGUGGUAaau -5'
5550 5' -54.5 NC_001806.1 + 30858 0.72 0.648478
Target:  5'- ---uUCUGGGCCGCGGGgGCCGa--- -3'
miRNA:   3'- caccAGACCUGGCGCCUgUGGUaaau -5'
5550 5' -54.5 NC_001806.1 + 140068 1.07 0.005035
Target:  5'- cGUGGUCUGGACCGCGGACACCAUUUAc -3'
miRNA:   3'- -CACCAGACCUGGCGCCUGUGGUAAAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.