miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5551 3' -62.7 NC_001806.1 + 53874 0.71 0.3414
Target:  5'- gCUGUuuGGCaGCCGCGCGGGgaucagGGUcGCc -3'
miRNA:   3'- -GACGggCUG-CGGCGCGUCCa-----CCA-CGu -5'
5551 3' -62.7 NC_001806.1 + 55548 0.72 0.279851
Target:  5'- -gGCCCGACuUgGCGgGGGUGGUGUu -3'
miRNA:   3'- gaCGGGCUGcGgCGCgUCCACCACGu -5'
5551 3' -62.7 NC_001806.1 + 67214 0.67 0.519216
Target:  5'- -gGCCUGGCGgggCGCGCuGGUGG-GCc -3'
miRNA:   3'- gaCGGGCUGCg--GCGCGuCCACCaCGu -5'
5551 3' -62.7 NC_001806.1 + 74036 0.66 0.567042
Target:  5'- -gGcCCCGAgGCCGUuCAGGUucggcuggaggaGGUGCGg -3'
miRNA:   3'- gaC-GGGCUgCGGCGcGUCCA------------CCACGU- -5'
5551 3' -62.7 NC_001806.1 + 76283 0.68 0.455184
Target:  5'- cCUGgCCGcCGCCGCGgAGGagauauccgcGGUGCGc -3'
miRNA:   3'- -GACgGGCuGCGGCGCgUCCa---------CCACGU- -5'
5551 3' -62.7 NC_001806.1 + 76369 0.75 0.192658
Target:  5'- cCUGCCCGAgCGaggaCGCGCuGGUGGcgUGCGu -3'
miRNA:   3'- -GACGGGCU-GCg---GCGCGuCCACC--ACGU- -5'
5551 3' -62.7 NC_001806.1 + 77188 0.66 0.576755
Target:  5'- -cGCCCG--GCUGCGggacgAGGUGGUGCc -3'
miRNA:   3'- gaCGGGCugCGGCGCg----UCCACCACGu -5'
5551 3' -62.7 NC_001806.1 + 85747 0.66 0.595306
Target:  5'- -gGUCCGGaGCCGCGCggccacgucguccGGGgGGUGCc -3'
miRNA:   3'- gaCGGGCUgCGGCGCG-------------UCCaCCACGu -5'
5551 3' -62.7 NC_001806.1 + 92905 0.72 0.279851
Target:  5'- -gGCCgCGugGuCCGCGCAGGgcgGG-GCGg -3'
miRNA:   3'- gaCGG-GCugC-GGCGCGUCCa--CCaCGU- -5'
5551 3' -62.7 NC_001806.1 + 100387 0.69 0.446382
Target:  5'- -cGCCgGGCGgCGCGgGGGccggGGUGCc -3'
miRNA:   3'- gaCGGgCUGCgGCGCgUCCa---CCACGu -5'
5551 3' -62.7 NC_001806.1 + 100796 0.67 0.518275
Target:  5'- -cGCCCcucgcgaGACGCCgGCGaCAGGUGGcgaaaggGCGc -3'
miRNA:   3'- gaCGGG-------CUGCGG-CGC-GUCCACCa------CGU- -5'
5551 3' -62.7 NC_001806.1 + 102355 0.66 0.567042
Target:  5'- --cCCCGGgGCCGC-CGGGagcaccccgUGGUGCAu -3'
miRNA:   3'- gacGGGCUgCGGCGcGUCC---------ACCACGU- -5'
5551 3' -62.7 NC_001806.1 + 106543 0.69 0.437676
Target:  5'- -gGUgCGAUGCCGCGCuGGUGcGcGCGc -3'
miRNA:   3'- gaCGgGCUGCGGCGCGuCCAC-CaCGU- -5'
5551 3' -62.7 NC_001806.1 + 119182 0.66 0.622795
Target:  5'- uCUGCuuGGCGCCGCcGCcccgccggccgcgaAGGaGGcUGCGg -3'
miRNA:   3'- -GACGggCUGCGGCG-CG--------------UCCaCC-ACGU- -5'
5551 3' -62.7 NC_001806.1 + 128047 0.68 0.473063
Target:  5'- aUGCCCGugGCgGCcacggccccCAGGUGGggGCc -3'
miRNA:   3'- gACGGGCugCGgCGc--------GUCCACCa-CGu -5'
5551 3' -62.7 NC_001806.1 + 133055 0.68 0.481224
Target:  5'- cCUGCCCuGCGCUGCGgCagcuccuGGGUGGgGUAa -3'
miRNA:   3'- -GACGGGcUGCGGCGC-G-------UCCACCaCGU- -5'
5551 3' -62.7 NC_001806.1 + 136549 0.66 0.615912
Target:  5'- -cGCCCGGCGCaaaGCAGGcgaccaacccgUGG-GCAa -3'
miRNA:   3'- gaCGGGCUGCGgcgCGUCC-----------ACCaCGU- -5'
5551 3' -62.7 NC_001806.1 + 139112 0.69 0.437676
Target:  5'- gCUGaCCGGCucGCCGCGCGGG-GG-GCu -3'
miRNA:   3'- -GACgGGCUG--CGGCGCGUCCaCCaCGu -5'
5551 3' -62.7 NC_001806.1 + 139765 1.08 0.000821
Target:  5'- aCUGCCCGACGCCGCGCAGGUGGUGCAu -3'
miRNA:   3'- -GACGGGCUGCGGCGCGUCCACCACGU- -5'
5551 3' -62.7 NC_001806.1 + 141706 0.66 0.614929
Target:  5'- cCUGgCCGAUGUaaccaCGCGCAccucgucGGgGGUGCAa -3'
miRNA:   3'- -GACgGGCUGCG-----GCGCGU-------CCaCCACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.