miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5552 3' -55.5 NC_001806.1 + 151304 0.72 0.583553
Target:  5'- cGGCggugGGCCG-GGCCucuGGCGCCGGc -3'
miRNA:   3'- cUCGa---CCGGUaCCGGuauUUGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 150662 0.67 0.839217
Target:  5'- uGGUUGGCCG-GGCCccgccGCGCUGGc -3'
miRNA:   3'- cUCGACCGGUaCCGGuauu-UGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 148070 0.71 0.62504
Target:  5'- -uGCU-GCCguGUGGCCcgAUGGGCGCCGAg -3'
miRNA:   3'- cuCGAcCGG--UACCGG--UAUUUGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 139361 1.08 0.003054
Target:  5'- gGAGCUGGCCAUGGCCAUAAACGCCGAc -3'
miRNA:   3'- -CUCGACCGGUACCGGUAUUUGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 138442 0.72 0.593889
Target:  5'- cAGCUGGUCGUGGCCcgcaacGACGUCa- -3'
miRNA:   3'- cUCGACCGGUACCGGuau---UUGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 137675 0.7 0.707719
Target:  5'- cGGUUGGCCccGGCCAcccacgGGGCGCUGc -3'
miRNA:   3'- cUCGACCGGuaCCGGUa-----UUUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 133234 0.69 0.786133
Target:  5'- cGGCgGGCCAUcgagacGGCCGUGGGaGCCGu -3'
miRNA:   3'- cUCGaCCGGUA------CCGGUAUUUgCGGCu -5'
5552 3' -55.5 NC_001806.1 + 133002 0.74 0.454721
Target:  5'- aGAGCccugGGCCggGGCCGUcuugGAGCGCCu- -3'
miRNA:   3'- -CUCGa---CCGGuaCCGGUA----UUUGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 132731 0.76 0.383465
Target:  5'- cGAGCUGGCCcggcGUGGCCucggcGGCaGCCGGa -3'
miRNA:   3'- -CUCGACCGG----UACCGGuau--UUG-CGGCU- -5'
5552 3' -55.5 NC_001806.1 + 132656 0.67 0.839217
Target:  5'- -cGCggGGCCGcGGCCGcuuACGCCGc -3'
miRNA:   3'- cuCGa-CCGGUaCCGGUauuUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 128511 0.66 0.892247
Target:  5'- cAGCgUGGCgugcggCAUGGCCAUGcGgGCCGc -3'
miRNA:   3'- cUCG-ACCG------GUACCGGUAUuUgCGGCu -5'
5552 3' -55.5 NC_001806.1 + 120106 0.67 0.839217
Target:  5'- cGGGCccugGGCCA-GGCCAUccGgGCCGc -3'
miRNA:   3'- -CUCGa---CCGGUaCCGGUAuuUgCGGCu -5'
5552 3' -55.5 NC_001806.1 + 119906 0.73 0.512583
Target:  5'- -cGCUGGCCAcGGCCcUGAccgaggccuGCGCCGc -3'
miRNA:   3'- cuCGACCGGUaCCGGuAUU---------UGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 117984 0.74 0.473632
Target:  5'- aGGCUcgGGUguUGGCCGUGAACGCgGGa -3'
miRNA:   3'- cUCGA--CCGguACCGGUAUUUGCGgCU- -5'
5552 3' -55.5 NC_001806.1 + 117882 0.66 0.885339
Target:  5'- cGGCgggGGCCGaGcCCGUGAGCGCgCGGa -3'
miRNA:   3'- cUCGa--CCGGUaCcGGUAUUUGCG-GCU- -5'
5552 3' -55.5 NC_001806.1 + 117373 0.68 0.81344
Target:  5'- cGGCcugGGCCGcgagguagaUGGCCAUAauGACGgCGAc -3'
miRNA:   3'- cUCGa--CCGGU---------ACCGGUAU--UUGCgGCU- -5'
5552 3' -55.5 NC_001806.1 + 116657 0.66 0.905352
Target:  5'- -uGCUGGCggaCGUccaacaacucGGucCCGUAAACGCCGAg -3'
miRNA:   3'- cuCGACCG---GUA----------CC--GGUAUUUGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 115143 0.66 0.885339
Target:  5'- aGGGaUGGaCCAcGGCCA-GGACGCCGu -3'
miRNA:   3'- -CUCgACC-GGUaCCGGUaUUUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 114306 0.66 0.905352
Target:  5'- -uGCUGGCCcacaacAUGGCCG--AACGCa-- -3'
miRNA:   3'- cuCGACCGG------UACCGGUauUUGCGgcu -5'
5552 3' -55.5 NC_001806.1 + 113411 0.66 0.907857
Target:  5'- gGAGCUGggggugggacgccacGCCAUGGCCcc---CGCCa- -3'
miRNA:   3'- -CUCGAC---------------CGGUACCGGuauuuGCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.