miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5552 3' -55.5 NC_001806.1 + 34398 0.68 0.830809
Target:  5'- uGGGC-GGCgGUGGCCGggccGgGCCGGg -3'
miRNA:   3'- -CUCGaCCGgUACCGGUauu-UgCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 98699 0.68 0.81697
Target:  5'- -cGCUGGCCGugggucuguugguccUGGCCGgccuGGCGgCGGc -3'
miRNA:   3'- cuCGACCGGU---------------ACCGGUau--UUGCgGCU- -5'
5552 3' -55.5 NC_001806.1 + 76654 0.68 0.81344
Target:  5'- cGGCga-CCGUGGCCA-AGACGCUGGa -3'
miRNA:   3'- cUCGaccGGUACCGGUaUUUGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 117373 0.68 0.81344
Target:  5'- cGGCcugGGCCGcgagguagaUGGCCAUAauGACGgCGAc -3'
miRNA:   3'- cUCGa--CCGGU---------ACCGGUAU--UUGCgGCU- -5'
5552 3' -55.5 NC_001806.1 + 90303 0.68 0.81344
Target:  5'- aGGCcaacgUGGCCGUGGUCGUGGGuucuCGCaCGAc -3'
miRNA:   3'- cUCG-----ACCGGUACCGGUAUUU----GCG-GCU- -5'
5552 3' -55.5 NC_001806.1 + 70932 0.68 0.804496
Target:  5'- gGAGC-GcGCCGUGGUCGU-GGCGCCc- -3'
miRNA:   3'- -CUCGaC-CGGUACCGGUAuUUGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 3360 0.68 0.804496
Target:  5'- cGGGCcgGGCCccGGCCAgccccgGGACgGCCGc -3'
miRNA:   3'- -CUCGa-CCGGuaCCGGUa-----UUUG-CGGCu -5'
5552 3' -55.5 NC_001806.1 + 133234 0.69 0.786133
Target:  5'- cGGCgGGCCAUcgagacGGCCGUGGGaGCCGu -3'
miRNA:   3'- cUCGaCCGGUA------CCGGUAUUUgCGGCu -5'
5552 3' -55.5 NC_001806.1 + 104914 0.69 0.786133
Target:  5'- -uGCUGGCguuCGUGGCCcucauccCGCCGAc -3'
miRNA:   3'- cuCGACCG---GUACCGGuauuu--GCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 68274 0.69 0.776731
Target:  5'- --uCUGGCCAcGGCCAagcUGcGCGCCGc -3'
miRNA:   3'- cucGACCGGUaCCGGU---AUuUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 60839 0.69 0.767197
Target:  5'- gGAGCgggGGCCGUGGaCUcuucugAAACGCCu- -3'
miRNA:   3'- -CUCGa--CCGGUACC-GGua----UUUGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 92931 0.69 0.767197
Target:  5'- cGGGCcuggaGGCCggGGCCcgcgcgcugAUGGACGCCGu -3'
miRNA:   3'- -CUCGa----CCGGuaCCGG---------UAUUUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 74608 0.69 0.767197
Target:  5'- cGGGCUGucGCCAgaGGCCAcgcgcAugGCCGAg -3'
miRNA:   3'- -CUCGAC--CGGUa-CCGGUau---UugCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 41864 0.69 0.757538
Target:  5'- cGAGCgcgcagguaGGCCuUGGCCGUAu-CGCCa- -3'
miRNA:   3'- -CUCGa--------CCGGuACCGGUAUuuGCGGcu -5'
5552 3' -55.5 NC_001806.1 + 70695 0.69 0.757538
Target:  5'- -uGCUGGCCGUGGUCc--GGCG-CGAa -3'
miRNA:   3'- cuCGACCGGUACCGGuauUUGCgGCU- -5'
5552 3' -55.5 NC_001806.1 + 2771 0.69 0.755592
Target:  5'- cGGGCgGGCCugcgccgcggcGGCCcgGGGCGCCGc -3'
miRNA:   3'- -CUCGaCCGGua---------CCGGuaUUUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 75982 0.69 0.747765
Target:  5'- gGAGCgcggccuucggGGCCGcGGCCGacacguACGCCGAc -3'
miRNA:   3'- -CUCGa----------CCGGUaCCGGUauu---UGCGGCU- -5'
5552 3' -55.5 NC_001806.1 + 100768 0.69 0.737886
Target:  5'- cGAGCUcGGCCucggcGGCCAgu--CGCCGc -3'
miRNA:   3'- -CUCGA-CCGGua---CCGGUauuuGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 30228 0.7 0.717854
Target:  5'- -cGC-GGCCGUGGCCccgugcgugcGAGCGCCGc -3'
miRNA:   3'- cuCGaCCGGUACCGGua--------UUUGCGGCu -5'
5552 3' -55.5 NC_001806.1 + 108200 0.7 0.717854
Target:  5'- -cGCUGGgCGUGGUUAUGAuuacCGCCGc -3'
miRNA:   3'- cuCGACCgGUACCGGUAUUu---GCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.