miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5553 3' -56.4 NC_001806.1 + 151635 0.66 0.892346
Target:  5'- aGGCaaGCAUGUGCgUGCaGAGGcgaGUAguGCu -3'
miRNA:   3'- -CCG--UGUACGCG-ACG-CUCCa--CGUguCG- -5'
5553 3' -56.4 NC_001806.1 + 151156 0.72 0.547591
Target:  5'- aGGCGCAgGCGC-GCcAGGUGCuccGCGGUg -3'
miRNA:   3'- -CCGUGUaCGCGaCGcUCCACG---UGUCG- -5'
5553 3' -56.4 NC_001806.1 + 148161 0.72 0.557639
Target:  5'- gGGCGCGgcgGCGCcucUGCGuGGggggGCGCGGg -3'
miRNA:   3'- -CCGUGUa--CGCG---ACGCuCCa---CGUGUCg -5'
5553 3' -56.4 NC_001806.1 + 147810 0.67 0.831803
Target:  5'- uGGCAUggGCGCcGCGGGGgGC-CuGUg -3'
miRNA:   3'- -CCGUGuaCGCGaCGCUCCaCGuGuCG- -5'
5553 3' -56.4 NC_001806.1 + 147640 0.74 0.469734
Target:  5'- gGGCACAcgGCGCgcguccGCGGGGcGgGCGGCc -3'
miRNA:   3'- -CCGUGUa-CGCGa-----CGCUCCaCgUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 145030 0.76 0.340402
Target:  5'- cGGCGCAUGCGCUGUGGuuuuuuuuuccucGGUGUuCuGCc -3'
miRNA:   3'- -CCGUGUACGCGACGCU-------------CCACGuGuCG- -5'
5553 3' -56.4 NC_001806.1 + 138409 1.14 0.001089
Target:  5'- gGGCACAUGCGCUGCGAGGUGCACAGCa -3'
miRNA:   3'- -CCGUGUACGCGACGCUCCACGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 132639 0.67 0.831803
Target:  5'- cGGCACGggaccugGUGC-GCGGGGc-CGCGGCc -3'
miRNA:   3'- -CCGUGUa------CGCGaCGCUCCacGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 127898 0.67 0.814703
Target:  5'- aGGCGCggGUGCaGCGGa--GCACGGCc -3'
miRNA:   3'- -CCGUGuaCGCGaCGCUccaCGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 118833 0.71 0.618788
Target:  5'- gGGCuCAUGCcaccgGCGAcuguaccccguGGUGCACGGCg -3'
miRNA:   3'- -CCGuGUACGcga--CGCU-----------CCACGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 117750 0.68 0.796934
Target:  5'- uGCACGUGCGUgGCGuGGcG-ACGGCc -3'
miRNA:   3'- cCGUGUACGCGaCGCuCCaCgUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 116159 0.68 0.778566
Target:  5'- cGGCGCugcaGCGCUGCGAaGG-GCGggUGGUa -3'
miRNA:   3'- -CCGUGua--CGCGACGCU-CCaCGU--GUCG- -5'
5553 3' -56.4 NC_001806.1 + 112703 0.72 0.567739
Target:  5'- cGCGCGUGCGC-GCGGaucuGGUGUccauCGGCg -3'
miRNA:   3'- cCGUGUACGCGaCGCU----CCACGu---GUCG- -5'
5553 3' -56.4 NC_001806.1 + 109934 0.68 0.778566
Target:  5'- uGGCAaucuccccGgGCUGCGAGGcaCACGGCc -3'
miRNA:   3'- -CCGUgua-----CgCGACGCUCCacGUGUCG- -5'
5553 3' -56.4 NC_001806.1 + 109691 0.75 0.397925
Target:  5'- gGGCugGUuCGCaGCGAGGUGCAguacuCGGCc -3'
miRNA:   3'- -CCGugUAcGCGaCGCUCCACGU-----GUCG- -5'
5553 3' -56.4 NC_001806.1 + 106531 0.66 0.885532
Target:  5'- aGCugGUGCucgGgUGCGAugccgcgcuGGUGCGCGcGCg -3'
miRNA:   3'- cCGugUACG---CgACGCU---------CCACGUGU-CG- -5'
5553 3' -56.4 NC_001806.1 + 100903 0.67 0.82334
Target:  5'- cGCgACGUGCGCgaacagcgUGCGAucggGGUGCGCcucgccccccaGGCg -3'
miRNA:   3'- cCG-UGUACGCG--------ACGCU----CCACGUG-----------UCG- -5'
5553 3' -56.4 NC_001806.1 + 99722 0.67 0.840083
Target:  5'- cGUAgGggGCGCUGUGuGGUGgGgGGCg -3'
miRNA:   3'- cCGUgUa-CGCGACGCuCCACgUgUCG- -5'
5553 3' -56.4 NC_001806.1 + 95553 0.68 0.805897
Target:  5'- gGGCGC-UGCGUccGCGAGcaGCGCGGg -3'
miRNA:   3'- -CCGUGuACGCGa-CGCUCcaCGUGUCg -5'
5553 3' -56.4 NC_001806.1 + 95290 0.76 0.348909
Target:  5'- cGCGCAUGgGg-GCGGGGgGCGCGGCg -3'
miRNA:   3'- cCGUGUACgCgaCGCUCCaCGUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.