miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5554 3' -63.9 NC_001806.1 + 635 0.66 0.580691
Target:  5'- uCCCCGgccCCAGcCCUCCCCGGCc----- -3'
miRNA:   3'- uGGGGC---GGUU-GGAGGGGCCGaccugc -5'
5554 3' -63.9 NC_001806.1 + 111262 0.66 0.570156
Target:  5'- cGCCuCUGCCAAuuUCUUCCUGGCacgcuuuUGGACc -3'
miRNA:   3'- -UGG-GGCGGUU--GGAGGGGCCG-------ACCUGc -5'
5554 3' -63.9 NC_001806.1 + 53182 0.66 0.533236
Target:  5'- uGCagCGCCGGCCUCCCCGuacaUUGaGGCGg -3'
miRNA:   3'- -UGggGCGGUUGGAGGGGCc---GAC-CUGC- -5'
5554 3' -63.9 NC_001806.1 + 93859 0.66 0.580691
Target:  5'- cGCgCCGCCGACU--CCCGGCUugccGGuCGg -3'
miRNA:   3'- -UGgGGCGGUUGGagGGGCCGA----CCuGC- -5'
5554 3' -63.9 NC_001806.1 + 20163 0.66 0.533236
Target:  5'- cCCCCGCCGcccggGCCcgCCCCcggGGCcGGcGCGg -3'
miRNA:   3'- uGGGGCGGU-----UGGa-GGGG---CCGaCC-UGC- -5'
5554 3' -63.9 NC_001806.1 + 151251 0.66 0.571112
Target:  5'- aGCCCCGCCccCCgggCCCacgccgGGC-GGugGg -3'
miRNA:   3'- -UGGGGCGGuuGGa--GGGg-----CCGaCCugC- -5'
5554 3' -63.9 NC_001806.1 + 68566 0.66 0.580691
Target:  5'- gAUUCCGCCGGCCUgcgcaCCgCGGCggcccugGGGCc -3'
miRNA:   3'- -UGGGGCGGUUGGA-----GGgGCCGa------CCUGc -5'
5554 3' -63.9 NC_001806.1 + 115212 0.66 0.590302
Target:  5'- cUUCCGCCGGCCcugcaacCCCCGG--GGACGc -3'
miRNA:   3'- uGGGGCGGUUGGa------GGGGCCgaCCUGC- -5'
5554 3' -63.9 NC_001806.1 + 114197 0.66 0.533236
Target:  5'- gACCCCGCgCAcccCCUgcaCCCGGCcaaucUGGugGc -3'
miRNA:   3'- -UGGGGCG-GUu--GGAg--GGGCCG-----ACCugC- -5'
5554 3' -63.9 NC_001806.1 + 24805 0.66 0.533236
Target:  5'- gGCCCUGCCGccggcGCCgCCCgGgauucGCUGGGCc -3'
miRNA:   3'- -UGGGGCGGU-----UGGaGGGgC-----CGACCUGc -5'
5554 3' -63.9 NC_001806.1 + 67188 0.66 0.565383
Target:  5'- gGCCUCGCCcagccgcucggucuGCCggCCUGGCgGGGCGc -3'
miRNA:   3'- -UGGGGCGGu-------------UGGagGGGCCGaCCUGC- -5'
5554 3' -63.9 NC_001806.1 + 106749 0.66 0.551129
Target:  5'- uCCCUgacgcggGCCGACaacggCUCCGcGCUGGACGc -3'
miRNA:   3'- uGGGG-------CGGUUGga---GGGGC-CGACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 30222 0.66 0.533236
Target:  5'- cCCCCGCgCGGCCguggCCCCGuGCgu-GCGa -3'
miRNA:   3'- uGGGGCG-GUUGGa---GGGGC-CGaccUGC- -5'
5554 3' -63.9 NC_001806.1 + 96519 0.66 0.555869
Target:  5'- gGCCCUGCCAcuccggcgccGCCcgCCCCuGGCgcccccccaacgggGGACc -3'
miRNA:   3'- -UGGGGCGGU----------UGGa-GGGG-CCGa-------------CCUGc -5'
5554 3' -63.9 NC_001806.1 + 20297 0.66 0.549236
Target:  5'- gGCCCCGCCc-CCUuggggcggucccgcCCgCCGGCcaauggggGGGCGg -3'
miRNA:   3'- -UGGGGCGGuuGGA--------------GG-GGCCGa-------CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 106351 0.66 0.552076
Target:  5'- cGCCCCcCCGACCg--CCGGUUGGGg- -3'
miRNA:   3'- -UGGGGcGGUUGGaggGGCCGACCUgc -5'
5554 3' -63.9 NC_001806.1 + 132836 0.66 0.561572
Target:  5'- -aCCCGCCcgcGGCCgucgggCCCGuCUGGACGg -3'
miRNA:   3'- ugGGGCGG---UUGGag----GGGCcGACCUGC- -5'
5554 3' -63.9 NC_001806.1 + 79990 0.66 0.570156
Target:  5'- uCCCgCGCCAACCcCCCCcaggguucccguaGGC-GGGCc -3'
miRNA:   3'- uGGG-GCGGUUGGaGGGG-------------CCGaCCUGc -5'
5554 3' -63.9 NC_001806.1 + 10906 0.67 0.478258
Target:  5'- uCCUCGCCGACaCUCaCCCGuCUccaGGACGu -3'
miRNA:   3'- uGGGGCGGUUG-GAG-GGGCcGA---CCUGC- -5'
5554 3' -63.9 NC_001806.1 + 16935 0.67 0.478258
Target:  5'- cACCCgGgaCGGCUuugUCUCCGGCgGGACGg -3'
miRNA:   3'- -UGGGgCg-GUUGG---AGGGGCCGaCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.